PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G39020.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 321aa    MW: 33457 Da    PI: 8.4912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G39020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053114136123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+F++   L  H  +H
  OGLUM02G39020.1 114 YECKTCNKCFPTFQALGGHRASH 136
                      99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.47E-8113136No hitNo description
PfamPF139121.8E-11113138IPR007087Zinc finger, C2H2
SMARTSM003550.094114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576671.47E-8207234No hitNo description
PfamPF139128.9E-13211235IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349212234IPR007087Zinc finger, C2H2
SMARTSM003550.026212234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSVEDKHAGV VKRKRTKRPR HHAAPASSSE STTTEEEDMA HCLILLAQGA AVVDSKPSTP  60
APPPAQPPVL AAPAPAPPPP QPPVVVVKSE RYTSRKYTEA ATTADGVRAG FYVYECKTCN  120
KCFPTFQALG GHRASHKKPR LPGADDDNVN NVTNTNAIVV KSKPPLTTTT TPSAPSPPPP  180
QADAVVVPDV TTVLSLNNVA AAGSIINKLR VHECSICGAE FGSGQALGGH MRRHRPLHAP  240
PERAATTAAT TAATATAPDI KKEGSTSINL ELDLNLPAPS DEESVSPPPP PVLLALGGQF  300
NDGKKPILQL TASAALVGCH Y
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039890.0AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040260.0AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623775.11e-157zinc finger protein ZAT5
TrEMBLA0A0D9Z0D80.0A0A0D9Z0D8_9ORYZ; Uncharacterized protein
STRINGOGLUM02G39020.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-23C2H2 family protein