PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G27190.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 338aa    MW: 35153.1 Da    PI: 5.4072
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G27190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05626323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C+ C ++F ++  L  H+r+H
  OGLUM02G27190.1  6 CKLCYRRFASPRALAGHMRSH 26
                     ********************9 PP
2zf-C2H211.40.00097195217123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F++   L  H  +H
  OGLUM02G27190.1 195 FQCPACKKVFRSYQALGGHRASH 217
                      89**********99999998887 PP
3zf-C2H210.90.0014259281123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F +   L  H ++H
  OGLUM02G27190.1 259 HECPYCYRVFASGQALGGHKKSH 281
                      79************999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.14426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141427IPR007087Zinc finger, C2H2
PfamPF139121.2E-4626IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139128.5E-11194217IPR007087Zinc finger, C2H2
SMARTSM003550.026195217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.71E-7195217No hitNo description
PROSITE profilePS501579.286195217IPR007087Zinc finger, C2H2
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
SuperFamilySSF576672.71E-7254281No hitNo description
SMARTSM003550.39259281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912259281IPR007087Zinc finger, C2H2
PfamPF139129.8E-12259281IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAKNACKLCY RRFASPRALA GHMRSHSVAA ANAAAAAAAA AAAKLQISSA SSASTSFTAA  60
DEEEEEEEEE EEDVGFKKPL SIYALRENPK RSLRVSEYAF SDRESEAEST PTPAAKGLRG  120
GGGDGEPMSS LSYAGTPEEE VALALMMLSR DTWPSVERGG GGGEYSDDGS DDGYALPPPS  180
PAPAPAPVPE KRTRFQCPAC KKVFRSYQAL GGHRASHVRG GRGGCCAPPV APPPQPHPQP  240
PLPEHDAGEE DMDGKAPPHE CPYCYRVFAS GQALGGHKKS HVCSAAAAAA HAQTPGGGAP  300
PPQPKILGMI DLNFAPPVDE VELSAVSDPH FPSNPPGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050720.0AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624884.11e-164zinc finger protein ZAT1
TrEMBLA0A0D9YVZ50.0A0A0D9YVZ5_9ORYZ; Uncharacterized protein
STRINGOGLUM02G27190.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-22C2H2-like zinc finger protein