PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G27180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 619aa MW: 65668.4 Da PI: 6.3264 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.5e-05 | 119 | 136 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F+++ +L H OGLUM02G27180.1 119 TCENCGKEFTSWKTLLDH 136 6***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.8E-5 | 36 | 59 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.92E-6 | 37 | 59 | No hit | No description |
PROSITE profile | PS50157 | 8.704 | 37 | 59 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.2 | 37 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.92E-6 | 113 | 138 | No hit | No description |
PROSITE profile | PS50157 | 8.621 | 118 | 145 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 200 | 118 | 138 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.28E-7 | 295 | 318 | No hit | No description |
SMART | SM00355 | 0.77 | 296 | 318 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.1E-8 | 296 | 320 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.034 | 296 | 323 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 298 | 318 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.28E-7 | 427 | 454 | No hit | No description |
Pfam | PF13912 | 1.9E-12 | 431 | 455 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.46 | 432 | 454 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 432 | 454 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 434 | 454 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MAMVVAGSHR PPPPPQSLRL VPPPPPQPPP PPLTYRHHCK VCKKGFMCGR ALGGHMRAHG 60 IGDDNDTMDD DDGRDDDHSL SPCDGGGEPS EAAGSPTTTT TKRMYALRTN PGRPRNCRTC 120 ENCGKEFTSW KTLLDHGRCG LDEEDGRLDV SLRSPPLHDG GDENDGEDEE EGDDLTLAAG 180 GWSKGKRSRR AKVMAVGTGS VSELQLPAPS TEEEDLANFL VMLSSSSSSS SRVAQPAIVV 240 DDADQESCAS GSKDEERNRF LVPQPISMAA PMMAQMTVIA PQVVPQHIST VPRGMFECKA 300 CKKLFTSHQA LGGHRASHKK VKGCFAAKLE SSRNETSQTQ TQQQHVSAAP HDNTRATTSH 360 VITSDISMDA NTIGASADAD GKAAASGVGA GEIVLAGASS TDMAMMMSVE DFAPTPLAPS 420 AVSPFKKKGK VHECSICHRV FTSGQALGGH KRCHWLTSGA TDPLTKLQPV AQDHAMMAAM 480 CHQLTLGRPI FDPTDQRILD LNVPTNPLAE AVAARQQQQQ QVAALNDGAL CLNAAASVYL 540 QSWTGHSNGS HVNKTTATSS RINDAAGGVT TEDDEADSTS AKRAKIGDLK DMKVAGESLP 600 WLQVGIGISS ESKEKNTQE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107559 | 0.0 | AK107559.1 Oryza sativa Japonica Group cDNA clone:002-130-B07, full insert sequence. | |||
GenBank | AP005072 | 0.0 | AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12. | |||
GenBank | AP005289 | 0.0 | AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624902.1 | 0.0 | uncharacterized protein LOC4330215 | ||||
TrEMBL | A0A0D9YVZ4 | 0.0 | A0A0D9YVZ4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G27180.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 8e-12 | C2H2-like zinc finger protein |