PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G47440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YB | ||||||||
Protein Properties | Length: 368aa MW: 39478.6 Da PI: 7.3601 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 172.6 | 4.2e-54 | 33 | 128 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ yl+kyreleg OGLUM01G47440.1 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDPMRRYLNKYRELEG 126 89******************************************************************************************** PP NF-YB 96 ek 97 ++ OGLUM01G47440.1 127 DR 128 97 PP | |||||||
2 | NF-YB | 141.7 | 1.8e-44 | 227 | 318 | 3 | 94 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 qd++lPianv+rimk lP +akisk aket+qec++efisfvt+eas++c+re+rkt+ngdd+++a+ +lG+++y+++++ yl++yre e OGLUM01G47440.1 227 GQDNLLPIANVGRIMKDGLPPQAKISKRAKETIQECATEFISFVTGEASERCRRERRKTVNGDDVCHAMRSLGLDHYADAMHRYLQRYREGE 318 69***************************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.2E-50 | 27 | 138 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.68E-38 | 35 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-26 | 38 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 9.5E-17 | 66 | 84 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 69 | 85 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 9.5E-17 | 85 | 103 | No hit | No description |
PRINTS | PR00615 | 9.5E-17 | 104 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.20.10 | 2.9E-41 | 224 | 322 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.15E-32 | 228 | 328 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-23 | 232 | 295 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PROSITE pattern | PS00685 | 0 | 262 | 278 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MADHHGDHHA DGHRRQQQLQ GEAADQAAAE IIKEQDRLLP IANVGRIMKQ ILPPNAKISK 60 EAKETMQECV SEFISFVTGE ASDKCHKEKR KTVNGDDVCW AFGALGFDDY VDPMRRYLNK 120 YRELEGDRAA AAATSRSGAG AAAGPDHPSS SSSAAAATAG HFMFNAMDRS TDSSRHRDLN 180 FSGFNQLGRL QPMQGLPRAS SSSTSASRDR DGGDGDGGGG GVTMTNGQDN LLPIANVGRI 240 MKDGLPPQAK ISKRAKETIQ ECATEFISFV TGEASERCRR ERRKTVNGDD VCHAMRSLGL 300 DHYADAMHRY LQRYREGEEL AASLNSSSSA AAAAAAAGGS RGGGAIQIDV RAELSIFRSG 360 NNQGRPNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-39 | 32 | 316 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-39 | 32 | 316 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635864.1 | 1e-103 | nuclear transcription factor Y subunit B-1 | ||||
Refseq | XP_015635872.1 | 1e-103 | nuclear transcription factor Y subunit B-1 | ||||
Swissprot | O82248 | 2e-54 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A0D9YJQ9 | 0.0 | A0A0D9YJQ9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G47440.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 3e-55 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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