PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G34330.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 225aa    MW: 25041.2 Da    PI: 6.6999
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G34330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-0687112326
                      S---SGGGGTS..--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartG..tCkyGdrCkFaHg 26 
                       e+C++f+      C++G+ C+FaHg
  OGLUM01G34330.1  87 GEPCPDFRVAAraACPRGSGCRFAHG 112
                      5899999999999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-583114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.02884114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4119149IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAYETSSDHQ LAAAAEFLAA LQVHLAGAEA SSPTWGGRCA YDEDFMMYEF KVRRCPRSRA  60
HEWTSCPYAH PGEAARRRDP SHVTYTGEPC PDFRVAARAA CPRGSGCRFA HGTFETWLHP  120
SRYRTRPCRS GMLCARPVCF FAHNDKELRI VGDDAAAATP SPRSPFTTSE DSPPPSPMDM  180
KQIVLAMQQM DARKATRSVA PKTDMLQQEL EEDAPELGWV SDLLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106610.0AK110661.1 Oryza sativa Japonica Group cDNA clone:002-169-F02, full insert sequence.
GenBankAP0029720.0AP002972.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0638D12.
GenBankAP0032180.0AP003218.6 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0021A09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644032.11e-165zinc finger CCCH domain-containing protein 10
SwissprotQ94JI51e-166C3H10_ORYSJ; Zinc finger CCCH domain-containing protein 10
TrEMBLA0A0D9YEP91e-165A0A0D9YEP9_9ORYZ; Uncharacterized protein
STRINGOGLUM01G34330.11e-166(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.17e-45C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]