PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G29620.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 402aa    MW: 44714 Da    PI: 6.8529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G29620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.55.4e-19521868128
              NAM   8 hPtdeelvveyLkkkvegkk......lelee...vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWk 84 
                      hP+++el+  yL+++v + +          +   +i+e+d+y+++P dL +      + +++++ wyfFs  +    +g rk r+++  +g W+
  OGLUM01G29620.1  52 HPSEQELIETYLRPRVVSGDkpppssS---ScgfIIHEADVYSADPADLTRgfapavARSSGDEAWYFFSAVRGL--KGGRKARTVDdgAGCWH 140
                      9*************9877765766543...14437**************8557777544558889*****98775..588999976644788** PP

              NAM  85 atgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      +    k+vl++ +g+  g ++++ f ++ ++ + +++ W+m e +l
  OGLUM01G29620.1 141 SEAGAKPVLAAsSGRRLGHRQSFSFITKdDDGQRVRSGWLMVELSL 186
                      9999999998868889**********5436667789*****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.72545202IPR003441NAC domain
PfamPF023658.4E-1350185IPR003441NAC domain
SuperFamilySSF1019412.48E-2752202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGAASRPRRQ CRAPRRLDGG GGGSMDVHPS ELLRRSRCTA PRRLDDDEMD VHPSEQELIE  60
TYLRPRVVSG DKPPPSSSSC GFIIHEADVY SADPADLTRG FAPAVARSSG DEAWYFFSAV  120
RGLKGGRKAR TVDDGAGCWH SEAGAKPVLA ASSGRRLGHR QSFSFITKDD DGQRVRSGWL  180
MVELSLDVDE EEQLVLSKVY FSPRAPGAKK PTTAAAMSRH KRKLSTTDIA SPPRRQRRHR  240
VVPSSPPEEP NTSPSPAAAP PDQQEGGDDD PDRGSISWWL RRVFGLTATF TEEESIELNP  300
WLKDILWPFP PPLPPTPPPP CPSPRRKLID MPEIREFILR GSYLGGGPAP PRYECDHPAM  360
VMTGGDDQQQ LDEQRRDDVG DDRAHYDRVD GQLQFERHYL RM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638896.10.0uncharacterized protein LOC107276912
TrEMBLA0A0D9YCW00.0A0A0D9YCW0_9ORYZ; Uncharacterized protein
STRINGOGLUM01G29620.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-10NAC domain containing protein 2