PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G26510.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 429aa    MW: 46944.3 Da    PI: 7.5864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G26510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH344.9e-11107132227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C f++ t tCk+G++CkF H++
  OGLUM01G26510.1 107 GEKDCAFYMMTRTCKFGGSCKFDHPQ 132
                      7889********************97 PP
2zf-CCCH40.74.1e-13157182227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+ff++tG Ck+G++CkF+H++
  OGLUM01G26510.1 157 GEPDCPFFMKTGKCKFGSKCKFNHPK 182
                      789*********************96 PP
3zf-CCCH21.15.5e-07184204727
                      SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                      +f+a+tG Ck+ + CkF+H++
  OGLUM01G26510.1 184 KFYAKTGKCKFRAMCKFNHPK 204
                      79*****************96 PP
4zf-CCCH406.7e-13257282126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C+f++++G Ck+G++C+F+H+
  OGLUM01G26510.1 257 PGEVDCPFYMKMGSCKFGSTCRFNHP 282
                      57899********************9 PP
5zf-CCCH36.21e-11339360526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+f+++tG+Ck+ drCkF+H+
  OGLUM01G26510.1 339 VCDFYMKTGFCKFADRCKFHHP 360
                      7********************8 PP
6zf-CCCH345.1e-11394416527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C f+++tG Ck+G +CkF H+p
  OGLUM01G26510.1 394 VCAFYMKTGVCKFGMQCKFDHPP 416
                      7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0038105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615105133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-5106132IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8107132IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258155183IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10157182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5160184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5161182IPR000571Zinc finger, CCCH-type
SMARTSM003567.9183204IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.207184205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601256284IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7256283IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10258282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5260283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4262281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-7333362IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7334361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859334362IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8338360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-6339360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408389417IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5389416IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6392417IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8393416IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4394414IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR  60
SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC  120
KFGGSCKFDH PQWVPEGGIP NWKEAANVEE SYPEQQGEPD CPFFMKTGKC KFGSKCKFNH  180
PKEKFYAKTG KCKFRAMCKF NHPKDIEIPS SQNETESAVT VEGETDIGSA ADSVSAKMQT  240
PVAAAQEFNS KGLPMRPGEV DCPFYMKMGS CKFGSTCRFN HPDRLVLNFP LPLGQTILPT  300
PESMLLNSAN FMQGFDFHAA HMPVGPGPVT YPQRPGATVC DFYMKTGFCK FADRCKFHHP  360
IDRSAPDPSA NWEPAEESVQ LTLAGLPRRE DAVVCAFYMK TGVCKFGMQC KFDHPPPQEA  420
IAKVSNSGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116820.0AK111682.1 Oryza sativa Japonica Group cDNA clone:J013159G03, full insert sequence.
GenBankAK1121160.0AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622283.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0D9YBQ10.0A0A0D9YBQ1_9ORYZ; Uncharacterized protein
STRINGOGLUM01G26510.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-132floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]