PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OGLUM01G09110.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 340aa MW: 38882.5 Da PI: 5.8919

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G09110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	2e-14	58	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 +g+WT +E +l +++k++G ++Wk++ + g ++Rt++++k++w++ OGLUM01G09110.1 58 KGPWTSWENSILEKYIKKHGERNWKLVQKNTGllsfciTRRTDNEIKNYWNT 109 79************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.273	53	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-14	54	113	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-10	55	113	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-10	57	113	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-12	58	109	IPR001005	SANT/Myb domain
CDD	cd00167	2.25E-9	60	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MRGHRSRVRG DGGLRMHRSG SDPDSDKAHW YMSNSDDESF VDKDKDCRRG TVAPLLKKGP 60 WTSWENSILE KYIKKHGERN WKLVQKNTGL LSFCITRRTD NEIKNYWNTR IKKCKNNRWL 120 LYPANVCNDA LNEDQYGSVD PSVREKLTNN QLEDTTSMYS APQFSYASIS NILDRRLASK 180 DYDSIEDQRN RIEVAAEYEI PLPVLKTTNN DIFPSASIFA NHGISNGNLS ALSTTDALQM 240 ELPLIQFDPN NQFIYSRAYA THLTNLALLN DQSEELLNHI DVLKYVVMKE ELSGGTHTSM 300 TPSNELVVPR YEGDVPPLQD DFTPYLYLNG ANLSIFEDIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	D88621	0.0	D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881555.1	1e-160	transcription factor GAMYB
TrEMBL	A0A0D9Y5H8	0.0	A0A0D9Y5H8_9ORYZ; Uncharacterized protein
STRING	OGLUM01G09110.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15408	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	2e-15	myb domain protein 101