PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART11G03790.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 897aa MW: 97272.7 Da PI: 6.7306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART11G03790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00073	702	739	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a K s + Lek+v+++ Lq OBART11G03790.1 702 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 739 67799**********66......999999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.9E-20	25	157	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.493	689	738	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-4	702	751	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence Send to blast
MRCGGCARRP GGRTPSSGRP SAPPTPHLVW EDGYCGHASC PAGSDPSEAL PTDVGCAAAA 60 DTMTMCSLVN KVMASQVHVV GEGTVGRAAF TGNHQWIIHG TANDHGIPSE VAAEMSYQFR 120 VGIQTIAIIP VLPRGVLQLG STGVVLENKS FMTHAKKLCS QLNNRSSMAV SSSVKNSSSQ 180 QGRSRPLHGA SNVQSTENRS KLFSQFPVTC EQYNHPDTMA VSGSTSLNAC MNGSLLKIAQ 240 LNGQAVREHI VYSKPDVRFI QQVYRDGQLG SNAQSIAMSS DLISSSLRSV QKQPLLMNNI 300 SQLEYGDGAE TSADLRKNVL LKPPVCLDPF IHDRNINISH GITEVSNVIN DHGNFDFLSG 360 GARVVRANLC TSATSQVLDR RSHSVSGMLL HREPIVSCEV PQSSEFSTKM GSLERGSFQI 420 SSAPSSESDF QISNGLNTSI SRENQLSVSN HICQDQKING VNDLSATLST ERMNNMDGCK 480 PPGLSLERTS PLFMEQSVEN DLFDILGPQF HHLCHNAGAD LVHWTDAKPE SSDRDVPESS 540 IHADSAPLFS SRDNELYSGI FSLTDTDQLL DAVISNVNPA GKQSSDDSAS CKTSLTDIPA 600 TSYLCSKEMK QCGSSGVPSV LIKNESAQFI KQPCLAENAE DGCLSQNNGM HKSQIRLWIE 660 SGQSMKCESA SASNSKGLDT PSKANRKRSR PGESPKPRPK DRQLIQDRIK ELREMVPNGA 720 KCSIDALLEK TVKHMLFLQS VTKHADKLKD STESKILGSE NGPVWKDYFE GGATWAFDVG 780 SQSMTCPIIV EDLDRPRQML VEMICEDRGI FLEIADFIKG LGLTILRGAM EARKSKIWAR 840 FTVEANRDVT RMEIFLSLVR LLEPNCDSSG AAENANNVNM PLGLVHQPVI PATGRIQ

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence Send to blast

MRCGGCARRP GGRTPSSGRP SAPPTPHLVW EDGYCGHASC PAGSDPSEAL PTDVGCAAAA  60
DTMTMCSLVN KVMASQVHVV GEGTVGRAAF TGNHQWIIHG TANDHGIPSE VAAEMSYQFR  120
VGIQTIAIIP VLPRGVLQLG STGVVLENKS FMTHAKKLCS QLNNRSSMAV SSSVKNSSSQ  180
QGRSRPLHGA SNVQSTENRS KLFSQFPVTC EQYNHPDTMA VSGSTSLNAC MNGSLLKIAQ  240
LNGQAVREHI VYSKPDVRFI QQVYRDGQLG SNAQSIAMSS DLISSSLRSV QKQPLLMNNI  300
SQLEYGDGAE TSADLRKNVL LKPPVCLDPF IHDRNINISH GITEVSNVIN DHGNFDFLSG  360
GARVVRANLC TSATSQVLDR RSHSVSGMLL HREPIVSCEV PQSSEFSTKM GSLERGSFQI  420
SSAPSSESDF QISNGLNTSI SRENQLSVSN HICQDQKING VNDLSATLST ERMNNMDGCK  480
PPGLSLERTS PLFMEQSVEN DLFDILGPQF HHLCHNAGAD LVHWTDAKPE SSDRDVPESS  540
IHADSAPLFS SRDNELYSGI FSLTDTDQLL DAVISNVNPA GKQSSDDSAS CKTSLTDIPA  600
TSYLCSKEMK QCGSSGVPSV LIKNESAQFI KQPCLAENAE DGCLSQNNGM HKSQIRLWIE  660
SGQSMKCESA SASNSKGLDT PSKANRKRSR PGESPKPRPK DRQLIQDRIK ELREMVPNGA  720
KCSIDALLEK TVKHMLFLQS VTKHADKLKD STESKILGSE NGPVWKDYFE GGATWAFDVG  780
SQSMTCPIIV EDLDRPRQML VEMICEDRGI FLEIADFIKG LGLTILRGAM EARKSKIWAR  840
FTVEANRDVT RMEIFLSLVR LLEPNCDSSG AAENANNVNM PLGLVHQPVI PATGRIQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC133217	0.0	AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616921.1	0.0	transcription factor LHW isoform X1
TrEMBL	A0A0D3HIH0	0.0	A0A0D3HIH0_9ORYZ; Uncharacterized protein
STRING	OBART11G03790.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2654	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-54	conserved peptide upstream open reading frame 7