PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G00090.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 459aa    MW: 50703.3 Da    PI: 6.9969
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G00090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31322378360
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+++ ei+Y+geHnh+k
  OBART11G00090.1 322 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 378
                      9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.22E-3911192No hitNo description
PROSITE profilePS5060013.71719184IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1302.5E-684178No hitNo description
PfamPF029021.2E-591182IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:2.20.25.801.4E-27314379IPR003657WRKY domain
PROSITE profilePS5081123.72315379IPR003657WRKY domain
SuperFamilySSF1182901.57E-24317379IPR003657WRKY domain
SMARTSM007741.7E-34320378IPR003657WRKY domain
PfamPF031062.0E-24322377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAHGGGEEEE ERVLSHGDVV LLRCDLTILR GPHFLNDRII AFYLAHLAAD HDADDDLLLL  60
PPSIPYLLSN LPDPASVAAV ADPLRLASRR LVLLPVNDNP DVSHAEGGSH WTLLVLDNSN  120
AVSGPRFVHH DSLPPTNLPA ARRLAAVLRP LLPASAIPLI EGPTPRQTNG YDCGVFVLAV  180
ARAICNWWLT RARHSDSDSD SDWLEAVKRE PFNSTSFSPF DCIYQSLPVT AQDFGTWCDM  240
QSHKKVAAVK PVASRPSSRL RSFSMLQEDS TAIDSPRKTV EHIQHAIKRK QIQEKGACWD  300
NLTVSQSVRK PNVSAKNSLS YDGYSWRKYG QKQVKGSEFP RSYYKCTHPT CPVKRKVEMT  360
PDGRIAEIVY NGEHNHPKPH PPRKPTSSTS VETLVATNDA GLENKLEGCD QAIGSDAVVE  420
ALRGGCHCLD GFRNGNEISD CKKRYAYAVI FIQEKDLAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2bkq_A6e-27131955185SENTRIN-SPECIFIC PROTEASE 8
2bkq_B6e-27131955185SENTRIN-SPECIFIC PROTEASE 8
2bkq_C6e-27131955185SENTRIN-SPECIFIC PROTEASE 8
2bkq_D6e-27131955185SENTRIN-SPECIFIC PROTEASE 8
2bkr_A6e-27131955185SENTRIN-SPECIFIC PROTEASE 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617664.10.0uncharacterized protein LOC4349534
TrEMBLA0A0D3HH390.0A0A0D3HH39_9ORYZ; Uncharacterized protein
STRINGOBART11G00090.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-24WRKY DNA-binding protein 3