PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART10G16610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 198aa MW: 22423.3 Da PI: 6.8061 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.3 | 1.4e-07 | 55 | 103 | 14 | 62 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 R +A rs +R+ +i+eLe+kv+ L++e ++L +l l+ ++ + ++ OBART10G16610.1 55 RQSAARSKERRMRYIAELEQKVQILQTEATTLSAQLTLLQRDSSGMATQ 103 89**********************************9999887776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.5E-9 | 47 | 106 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.69E-14 | 48 | 96 | No hit | No description |
SuperFamily | SSF57959 | 3.86E-7 | 55 | 96 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.0E-8 | 55 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MDSLMGKLSF AANGEPAKFS LEFGSGDFTP AEMKRIMADE KLAEMALADP KRVKRQSAAR 60 SKERRMRYIA ELEQKVQILQ TEATTLSAQL TLLQRDSSGM ATQNNELKFR LQSMEQQAQL 120 RDALNEALTA EVQRLKLAAN EVGDTSSSSN LAHQIQLRCQ NQMLDLHKQQ QQQVEQIPFY 180 QLEQPEQQNG TARNHESK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108607 | 0.0 | AK108607.1 Oryza sativa Japonica Group cDNA clone:002-146-H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613793.1 | 1e-129 | transcription factor RF2a-like isoform X1 | ||||
Swissprot | Q69IL4 | 9e-44 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A0D3HFX6 | 1e-141 | A0A0D3HFX6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART10G16610.1 | 1e-142 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3536 | 35 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 3e-47 | bZIP family protein |
Publications ? help Back to Top | |||
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