PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G09370.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 308aa    MW: 32679.5 Da    PI: 6.5108
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G09370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-19103154556
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++++ eq+++Le+ Fe+ +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  OBART10G09370.1 103 RRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 154
                      46899**********************************************9 PP
2HD-ZIP_I/II1261.7e-40102191392
      HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      krrls eqv++LE+sFe+ +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkd++aL+r++da ++en++L + +++L++e+ 
  OBART10G09370.1 102 KRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIV 191
                      9*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.61E-1993158IPR009057Homeodomain-like
PROSITE profilePS5007116.84496156IPR001356Homeobox domain
SMARTSM003893.3E-1898160IPR001356Homeobox domain
CDDcd000867.11E-17102157No hitNo description
PfamPF000461.2E-16103154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-19104163IPR009057Homeodomain-like
PRINTSPR000314.1E-6127136IPR000047Helix-turn-helix motif
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PRINTSPR000314.1E-6136152IPR000047Helix-turn-helix motif
PfamPF021831.3E-9156195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MASNGAAAGA MAPFFPPNFL LQMQQPLPLH HQHLQDHAHG GHGGHHLLPP PPPSLSPFLP  60
DLAMDAPPPP MYEASGGDGG GGGAASEDEE DGVVEGEGVG VKRRLSVEQV RTLERSFESG  120
NKLEPERKAQ LARALGLQPR QVAIWFQNRR ARWKTKQLEK DFDALRRQLD AARAENDALL  180
SLNSKLHAEI VALKGGAAAA AGGGGSSCRQ EAASELINLN VKETEASCSN RSENSSEINL  240
DISRPAPPPP PPVANESPVN RGIPFYASIG RGGAGGVDID QLLLRGGHSP SPAAPPFWPW  300
ADGHHHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877000.0AK287700.1 Oryza sativa Japonica Group cDNA, clone: J065130H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613423.11e-146homeobox-leucine zipper protein HOX23-like
SwissprotA2Z7341e-147HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL51e-147HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLA0A0D3HDG60.0A0A0D3HDG6_9ORYZ; Uncharacterized protein
STRINGOBART10G09370.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.14e-46HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]