PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G17090.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 832aa    MW: 88107.2 Da    PI: 6.1496
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G17090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.32e-21122177156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  OBART09G17090.1 122 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 177
                      688999***********************************************999 PP
2START173.99.9e-553125432205
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                      la++a++elvk a+ +ep+W  s     e +n+de+ + f++  +     + +ea r+sg+ +  +++lv +l+d + +W+e+++    +a+t+
  OBART09G17090.1 312 LALAAMDELVKVAQMDEPLWLPSLdggfETLNYDEYHRAFARVLGqcpagYVSEATRESGIAIISSVDLVDSLMDAP-RWSEMFPcvvaRASTT 404
                      5789************************************8866699******************************.**************** PP

                      EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE-EESSEEEEEEEECTC CS
            START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvRaellpSgiliepksng 160
                      + issg      g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd    p +         sss++ ++llp+g++++++ ng
  OBART09G17090.1 405 DIISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDAVLRPDQnggggssssSSSYMGCRLLPTGCIVQDMNNG 498
                      ********************************************************988776556667777899******************** PP

                      EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
            START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                      +skvtwv h+++++   h+l+r+l++sg+a ga++w+a lqrqc+
  OBART09G17090.1 499 YSKVTWVVHAEYDETAAHQLYRPLLRSGQALGARRWLASLQRQCQ 543
                      ********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-22104179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-23109179IPR009057Homeodomain-like
PROSITE profilePS5007118.301119179IPR001356Homeobox domain
SMARTSM003891.5E-19120183IPR001356Homeobox domain
CDDcd000869.67E-20122179No hitNo description
PfamPF000466.1E-19122177IPR001356Homeobox domain
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
SMARTSM002344.9E-37311544IPR002913START domain
SuperFamilySSF559611.1E-28312543No hitNo description
PROSITE profilePS5084838.35312547IPR002913START domain
PfamPF018524.6E-46312543IPR002913START domain
CDDcd088751.79E-100312543No hitNo description
SuperFamilySSF559617.91E-15563755No hitNo description
SuperFamilySSF559617.91E-15783814No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MSFGGMFDGA GSGVFSYDAA GGGGGGVHNS RLLPTPPVPK PGGGFAAPGL SLGLQTMDGS  60
QLGDVNRSLA MMGNGGSGSG GDGDSLGRGR EDENDSRSGS DNLDGASGDE LDPDNSNPRK  120
KKKRYHRHTP QQIQELEAVF KECPHPDEKQ RMELSRRLNL ESRQVKFWFQ NRRTQMKTQI  180
ERHENALLRQ ENDKLRAENM TIREAMRNPM CASCGGAAVL GEVSLEEQHL RIENARLKDE  240
LDRVCALAGK FLGRPISSIS SPGPPSLQAC SGLELGVGSN GGFGLGALGA SAAMQSIPDL  300
MGGSSGLTGG PLALAAMDEL VKVAQMDEPL WLPSLDGGFE TLNYDEYHRA FARVLGQCPA  360
GYVSEATRES GIAIISSVDL VDSLMDAPRW SEMFPCVVAR ASTTDIISSG MGGTRSGSIQ  420
LMHAELQVLS PLVPIREVVF LRFCKQHAEG LWAVVDVSVD AVLRPDQNGG GGSSSSSSSY  480
MGCRLLPTGC IVQDMNNGYS KVTWVVHAEY DETAAHQLYR PLLRSGQALG ARRWLASLQR  540
QCQYLAILCS NSLPARDHAA ITPVGRRSML KLAQRMTDNF CAGVCASAAQ KWRRLDEWRG  600
EGGGGGGDGE DKVRMMARHS VGAPGEPPGV VLSATTSVRL PGTLPQRVFD YLRDEQRRGD  660
WDILANGEAM QEMDHIAKGQ HHGNAVSLLR PNATSGNQNN MLILQETCTD SSGSLVVYAP  720
VDVQSMHVVM NGGDSAYVSL LPSGFAILPD GHNNGASPSP AEVGGGASPN SAAGGGGGSN  780
NTGSLVTVAF QILVNNLPTA KLTVESVDTV SNLLSCTIQK IKSALQASII SP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0718770.0AK071877.1 Oryza sativa Japonica Group cDNA clone:J013040J18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612621.10.0homeobox-leucine zipper protein ROC6
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLA0A0D3H9550.0A0A0D3H955_9ORYZ; Uncharacterized protein
STRINGOBART09G17090.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1