PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART09G12140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 364aa MW: 38098.3 Da PI: 5.9477 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 7.7e-18 | 177 | 231 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k OBART09G12140.1 177 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 231 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.1 | 7.6e-41 | 177 | 267 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk OBART09G12140.1 177 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 267 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-18 | 162 | 227 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.01E-18 | 165 | 234 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 173 | 233 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 175 | 237 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.43E-17 | 177 | 234 | No hit | No description |
Pfam | PF00046 | 2.5E-15 | 177 | 231 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 208 | 231 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.4E-24 | 233 | 276 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.4E-10 | 233 | 267 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MELGLSLGEA MADAGRELVL GLGMGRREEA AVEAGRRDHE VRRELEFGSM SSRCGGSSPE 60 PTVRLTLLPM VPGLGLPWPP PPPPSSESSE CGDGHLEAST RGFDVNRPPS SGGGAEEEQD 120 DAAGAALSSS PNNSAGSFPM DDFSGHGLGG NDAAPGGGGG DRSCSRASDE DDGGSARKKL 180 RLSKEQSAFL EESFKEHSTL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE 240 YLKRCCETLT EENRRLQKEL AELRALKTVH PFYMHLPATT LSMCPSCERV ASNSAPATAS 300 SAATSSTAAP PAAPSSGGIA ATSSSSAAAA AAPDHRPSSF AALFSSPRGF PLSVAPQAQP 360 PTSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 233 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611029.1 | 0.0 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 0.0 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A0D3H7H2 | 0.0 | A0A0D3H7H2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART09G12140.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 9e-63 | homeobox from Arabidopsis thaliana |