PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G12140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 364aa    MW: 38098.3 Da    PI: 5.9477
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G12140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.7e-18177231256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OBART09G12140.1 177 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 231
                      788899***********************************************98 PP

2HD-ZIP_I/II127.17.6e-41177267192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  OBART09G12140.1 177 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 267
                      69*************************************************************************************9.555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-18162227IPR009057Homeodomain-like
SuperFamilySSF466892.01E-18165234IPR009057Homeodomain-like
PROSITE profilePS5007117.07173233IPR001356Homeobox domain
SMARTSM003891.1E-15175237IPR001356Homeobox domain
CDDcd000864.43E-17177234No hitNo description
PfamPF000462.5E-15177231IPR001356Homeobox domain
PROSITE patternPS000270208231IPR017970Homeobox, conserved site
SMARTSM003401.4E-24233276IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-10233267IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MELGLSLGEA MADAGRELVL GLGMGRREEA AVEAGRRDHE VRRELEFGSM SSRCGGSSPE  60
PTVRLTLLPM VPGLGLPWPP PPPPSSESSE CGDGHLEAST RGFDVNRPPS SGGGAEEEQD  120
DAAGAALSSS PNNSAGSFPM DDFSGHGLGG NDAAPGGGGG DRSCSRASDE DDGGSARKKL  180
RLSKEQSAFL EESFKEHSTL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE  240
YLKRCCETLT EENRRLQKEL AELRALKTVH PFYMHLPATT LSMCPSCERV ASNSAPATAS  300
SAATSSTAAP PAAPSSGGIA ATSSSSAAAA AAPDHRPSSF AALFSSPRGF PLSVAPQAQP  360
PTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225233RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611029.10.0homeobox-leucine zipper protein HOX11
SwissprotQ67UE20.0HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A0D3H7H20.0A0A0D3H7H2_9ORYZ; Uncharacterized protein
STRINGOBART09G12140.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-63homeobox from Arabidopsis thaliana