PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G10730.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 397aa    MW: 42933.7 Da    PI: 8.8179
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G10730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.92.9e-094686136
              AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkf 36
                     s y+GV++++++gr++A+++d  s+n    k+ k+++lg++
  OBART09G10730.1 46 SVYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGTY 86
                     78*******************888866656446*******9 PP
2AP2521.7e-16166217155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  OBART09G10730.1 166 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 217
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-64686IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-44786IPR001471AP2/ERF domain
SMARTSM003803.4E-1947137IPR001471AP2/ERF domain
PROSITE profilePS5103215.8347131IPR001471AP2/ERF domain
PRINTSPR003671.2E-54859IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-7103133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-7104133IPR001471AP2/ERF domain
PRINTSPR003671.2E-5113133IPR001471AP2/ERF domain
CDDcd000181.14E-22166227No hitNo description
PfamPF008471.6E-12166217IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18166227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-18167226IPR001471AP2/ERF domain
SMARTSM003801.7E-25167231IPR001471AP2/ERF domain
PROSITE profilePS5103218.36167225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAKPRKNSTT TNTSSSGVAA AAAAAAVKPK RTRKSVPRES PSQRSSVYRG VTRHRWTGRF  60
EAHLWDKNSW NESQNKKGKQ VYLGTYVRLS GHGLGMITQP ARAYDDEEAA ARAYDLAALK  120
YWGPDTILNF PLSAYEGELK EMEGQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW  180
EARIGRVFGN KYLYLGTYAT QEEAAMAYDM AAIEYRGLNA VTNFDLSRYI KWLRPGADGA  240
GAAQNPHPML GALSAQDLPA IDLDAMASSF QHDGHGAAAA AAQLIPARHS LGHTPTTSAL  300
SLLLQSPKFK EMIERTSAAE TTTTSSTTTS SSSPSPPQAT KDDGASPQCS FPEDIQTYFG  360
CAAEDGAAGA GYADVDGLFF GDLAAYASPA FHFELDL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116170.0AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611852.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-110AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D3H7020.0A0A0D3H702_9ORYZ; Uncharacterized protein
STRINGOBART09G10730.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.15e-98ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]