PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G22330.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 235aa MW: 24437.8 Da PI: 8.3624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G22330.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.5e-09	95	121	5	34
HHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 5 hnerErrRRdriNsafeeLrellPkaskap 34 h e+Er+RR+++N +f eLr +P+a OBART08G22330.1 95 HVEAERQRREKLNRRFCELRAAVPTA---E 121 889**********************8...3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.013	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-7	94	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	95	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-7	95	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.46E-6	95	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDELVLSPSS FSATACFPTL DFEFCEVPNQ WLLGLGHDEL DKDAAASALA AAAASQSASN 60 DDVPRNPPAT TTTTKRRGRK PGPRSGGGGA PPIGHVEAER QRREKLNRRF CELRAAVPTA 120 EARRAPLAPS AAAAAAWAAG LGAGAIGRDD LVVRMVGRDA AILRLTTAAA AARHAPARMM 180 CAVRALNLAV QHASVARVGG ATVQDVMVDD VPAALQDEAR LRAALLHTLQ LADTT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003914	0.0	AP003914.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1521_G02.
GenBank	AP004632	0.0	AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649359.1	1e-118	transcription factor bHLH14
TrEMBL	A0A0D3H2S7	1e-164	A0A0D3H2S7_9ORYZ; Uncharacterized protein
STRING	OBART08G22330.1	1e-165	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP893	33	130