PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G19670.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 441aa MW: 46973.5 Da PI: 6.4222

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G19670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	271	290	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OBART08G19670.1 271 FSCPVCFKTFNRYNNMQMHM 290 89*****************9 PP
2	zf-C2H2	12.4	0.00046	357	377	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ OBART08G19670.1 357 CRKCGKAFAVKGDWRTHEKNC 377 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.64	271	298	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.6E-6	271	290	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.38	271	293	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	273	293	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.78E-6	339	375	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-5	342	375	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.621	355	375	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	355	375	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	220	381	404	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAAAHLPP PLPPPYAALY PTAGGVGVGV 60 GAHHHHHQYP PAAFFHPPPV HQQHQAPPSP PLREALPLLS LSPTPARRGG VVDAAADSDS 120 DDDDDGDCCY HHLQDQEGAA AGSTATPAAA AARAPLFADL NCIPTCCGDD NDGGDPMDVE 180 VAGTTADIDA AVALRIGLPA GGTEADLLSG LTGAGIEHEE EEEDCKVDGG GSGGDDEVVP 240 LGFSSTPIGK LNKGQYWIPT PSQILIGPTQ FSCPVCFKTF NRYNNMQMHM WGHGSQYRKG 300 PESLRGVQPT AMLRLPCYCC AAGCRNNIDH PRARPLKDFR TLQTHYKRKH GLKPFLCRKC 360 GKAFAVKGDW RTHEKNCGKL WYCLCGSEFK HKRSLKDHAR AFGHAHTALD ADDDDGAVSD 420 ADAVVRPSSS MAASSLQPPP R

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAAAHLPP PLPPPYAALY PTAGGVGVGV  60
GAHHHHHQYP PAAFFHPPPV HQQHQAPPSP PLREALPLLS LSPTPARRGG VVDAAADSDS  120
DDDDDGDCCY HHLQDQEGAA AGSTATPAAA AARAPLFADL NCIPTCCGDD NDGGDPMDVE  180
VAGTTADIDA AVALRIGLPA GGTEADLLSG LTGAGIEHEE EEEDCKVDGG GSGGDDEVVP  240
LGFSSTPIGK LNKGQYWIPT PSQILIGPTQ FSCPVCFKTF NRYNNMQMHM WGHGSQYRKG  300
PESLRGVQPT AMLRLPCYCC AAGCRNNIDH PRARPLKDFR TLQTHYKRKH GLKPFLCRKC  360
GKAFAVKGDW RTHEKNCGKL WYCLCGSEFK HKRSLKDHAR AFGHAHTALD ADDDDGAVSD  420
ADAVVRPSSS MAASSLQPPP R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287566	0.0	AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649538.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-113	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D3H1W8	0.0	A0A0D3H1W8_9ORYZ; Uncharacterized protein
STRING	OBART08G19670.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]