PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G18860.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 894aa MW: 98675.4 Da PI: 8.6078

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G18860.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.6	2e-17	155	204	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+llP++ ++K +Ka+ L +++eYI+ Lq OBART08G18860.1 155 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 204 889***********************9....9*****************9 PP
2	HLH	54.6	2e-17	551	600	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+llP++ ++K +Ka+ L +++eYI+ Lq OBART08G18860.1 551 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 600 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.3E-23	152	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-18	153	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.939	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-15	155	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.30E-16	155	208	No hit	No description
SMART	SM00353	1.4E-13	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-23	548	621	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.939	549	599	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-18	549	623	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-15	551	600	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.30E-16	551	604	No hit	No description
SMART	SM00353	1.4E-13	555	605	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
MGLQGNKATH DFLSLYAAAA TATDYSPLPR HPDSKPSAPA PPPAQDFFLK THDFLPQNGG 60 GHQWSLPIAA RAVAVASSRP QQQQQQPPPP ERKGGGGFMD AGSRSSGGAG FDDDDGHAAR 120 REVSSSLKEL TVRVEGKGGS CSGSAGTDQM PNTPRSKHSA TEQRRRSKIN DRFQLLRDLL 180 PHNDQKRDKA SFLLEVIEYI RFLQEKVQKY EVSYPEWNQE NAKVVPWTNI YFRSSWKNAQ 240 NKGQVPADHS PDPPELLKNG SPYMFPFTGN SDNNNAVETA AASGAQDQAE TNPMSRVSYR 300 SVDTPSPNNV ADKVTSQPHA QLVRPSPAEN HTVNCDKLNN SDLAIDEGTI SLSSQYSQEL 360 LNKLNHALEN SGIDLSQASI SVQINLGKRA MKRSTPAATS TSKVGFMSRI DTKSHYIMFV 420 VIEIGAGNGC YTWSSLIRHL IVKQWAVSLG WVMALKNIDK PQSDTNQITA DGLLLKTPDI 480 QPFFAPNCVR GAPRFYSIGS CHENDFVFLH TLTHHSIFYC SKPPELTVRV EGKGGSCSGS 540 AGTDQMPNTP RSKHSATEQR RRSKINDRFQ LLRDLLPHND QKRDKASFLL EVIEYIRFLQ 600 EKVQKYEVSY PEWNQENAKV VPWTNIYFRS SWKNAQNKGQ VPADHSPDPP ELLKNGSPYM 660 FPFTGNSDNN NAVETAAASG AQDQAETNPM SRVSYRSVDT PSPNNVADKV TSQPHAQLVR 720 PSPAENHTVN CDKLNNSDLA IDEGTISLSS QYSQELLNKL NHALENSGID LSQASISVQI 780 NLGKRAMKRS TPAATSTSKV GFMSRIDTKS HYIMFVVIEI GAGNGCYTWS SLIRHLIVKQ 840 WAVSLGWVMA LKNIDKPQSD TNQITADGLL LKTPDIQPFF APNCVRGAPR FYVY

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

MGLQGNKATH DFLSLYAAAA TATDYSPLPR HPDSKPSAPA PPPAQDFFLK THDFLPQNGG  60
GHQWSLPIAA RAVAVASSRP QQQQQQPPPP ERKGGGGFMD AGSRSSGGAG FDDDDGHAAR  120
REVSSSLKEL TVRVEGKGGS CSGSAGTDQM PNTPRSKHSA TEQRRRSKIN DRFQLLRDLL  180
PHNDQKRDKA SFLLEVIEYI RFLQEKVQKY EVSYPEWNQE NAKVVPWTNI YFRSSWKNAQ  240
NKGQVPADHS PDPPELLKNG SPYMFPFTGN SDNNNAVETA AASGAQDQAE TNPMSRVSYR  300
SVDTPSPNNV ADKVTSQPHA QLVRPSPAEN HTVNCDKLNN SDLAIDEGTI SLSSQYSQEL  360
LNKLNHALEN SGIDLSQASI SVQINLGKRA MKRSTPAATS TSKVGFMSRI DTKSHYIMFV  420
VIEIGAGNGC YTWSSLIRHL IVKQWAVSLG WVMALKNIDK PQSDTNQITA DGLLLKTPDI  480
QPFFAPNCVR GAPRFYSIGS CHENDFVFLH TLTHHSIFYC SKPPELTVRV EGKGGSCSGS  540
AGTDQMPNTP RSKHSATEQR RRSKINDRFQ LLRDLLPHND QKRDKASFLL EVIEYIRFLQ  600
EKVQKYEVSY PEWNQENAKV VPWTNIYFRS SWKNAQNKGQ VPADHSPDPP ELLKNGSPYM  660
FPFTGNSDNN NAVETAAASG AQDQAETNPM SRVSYRSVDT PSPNNVADKV TSQPHAQLVR  720
PSPAENHTVN CDKLNNSDLA IDEGTISLSS QYSQELLNKL NHALENSGID LSQASISVQI  780
NLGKRAMKRS TPAATSTSKV GFMSRIDTKS HYIMFVVIEI GAGNGCYTWS SLIRHLIVKQ  840
WAVSLGWVMA LKNIDKPQSD TNQITADGLL LKTPDIQPFF APNCVRGAPR FYVY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100183	0.0	AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
GenBank	HQ858865	0.0	HQ858865.1 Oryza sativa Japonica Group isolate UT1674 bHLH transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650490.2	0.0	transcription factor BIM2 isoform X1
TrEMBL	A0A0D3H1L5	0.0	A0A0D3H1L5_9ORYZ; Uncharacterized protein
STRING	OBART08G18860.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	4e-54	BES1-interacting Myc-like protein 2