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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OBART08G15880.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 384aa MW: 43194.6 Da PI: 8.2002 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART08G15880.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.8 | 1.8e-52 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
l pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s
OBART08G15880.1 16 LLPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWKATGTDRPIYS 108
579***************************.89***************9888999*************************************** PP
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +++ +glkk+Lvfykgra +g ktdW+mhe+rl
OBART08G15880.1 109 TeGTKCIGLKKSLVFYKGRAARGIKTDWMMHEFRL 143
956667***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MEERNDVNMD KSDEILLPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKFDPWD 60
LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSTE GTKCIGLKKS 120
LVFYKGRAAR GIKTDWMMHE FRLPTLTDPS LPKKPIDKNI PLNDSWTICR IFKKTSSMAQ 180
RALCQTWGAQ LPGTIDPDIF STLQSVQASQ FALESSSCSL QAAATAAHQI TSKYALQGNN 240
NNQQQQQHKP SNPLDGSSCK VINFNCSQSA EVQNSQIILP FEAHTSQKTA TPLLFDTQFG 300
QPDQISRFVV DSCVNANGGG ISNKSQDPSA RKPGSGFSMN SDWDGVARIN FPFDLGADSS 360
EDWRSSIPWE SFLSPTTVHA EMPN
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-53 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-53 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-53 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-53 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-53 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 3e-53 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 3e-53 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 3e-53 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 3e-53 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 3e-53 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 3e-53 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 3e-53 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 2e-53 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 2e-53 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK073013 | 0.0 | AK073013.1 Oryza sativa Japonica Group cDNA clone:J033000B16, full insert sequence. |
