PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G05070.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 706aa    MW: 75928.5 Da    PI: 5.1471
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G05070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.41.9e-1176116141
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ 
  OBART08G05070.1  76 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEP 116
                      688999*********************************86 PP
2START209.71.1e-652534731206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela +a++elv++a+++ep+W++ss      ++++e+ + f+++ +      ++ea+r  +vv+m++ +lve+l+d++ q+ + +     +a+t
  OBART08G05070.1 253 ELAVAAMDELVQMAQLDEPLWSSSSepaaALLDEEEYARMFPRGLGpkqygLKSEASRHGAVVIMTHSNLVEILMDVN-QFATVFSsivsRAST 345
                      57899********************99999999********99888999*****************************.88888888888**** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      +ev+s+g      galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skvtwve
  OBART08G05070.1 346 HEVLSTGvagnynGALQVMSMEFQVPSPLVPtRESYFVRYCKNNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKVTWVE 435
                      *************************************************************98....7************************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      hv+++++++h+++++lv+sgla+gak+wv tl+rqce+
  OBART08G05070.1 436 HVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCER 473
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1063118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-1464118IPR009057Homeodomain-like
SMARTSM003894.7E-474128IPR001356Homeobox domain
CDDcd000862.01E-1075118No hitNo description
PfamPF000464.5E-976116IPR001356Homeobox domain
PROSITE profilePS5084840.408244476IPR002913START domain
SuperFamilySSF559611.18E-34245475No hitNo description
CDDcd088759.12E-124248472No hitNo description
SMARTSM002341.9E-61253473IPR002913START domain
PfamPF018522.3E-54254473IPR002913START domain
Gene3DG3DSA:3.30.530.205.0E-6319472IPR023393START-like domain
SuperFamilySSF559611.96E-16495696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MLDSHHLQQA LQQQYFDQIP VTTTAAADSG DNMLHGRADA GGLVDEFESK SCSENVDGAG  60
DGLSGDDQDP NQRPRKKRYH RHTQHQIQEM EAFFKECPHP DDKQRKELSR ELGLEPLQNQ  120
HERHENAQLR AENDKLRAEN MRYKEALSSA SCPNCGGPAA LGEMSFDEHH LRNARLRDEI  180
DRISGIAAKH VGKPPIVSFP VLSSPLAVAA ARSPLDLAGA YGVVTPGLDM FGGAGDLLRG  240
VHPLDADKPM IVELAVAAMD ELVQMAQLDE PLWSSSSEPA AALLDEEEYA RMFPRGLGPK  300
QYGLKSEASR HGAVVIMTHS NLVEILMDVN QFATVFSSIV SRASTHEVLS TGVAGNYNGA  360
LQVMSMEFQV PSPLVPTRES YFVRYCKNNS DGTWAVVDVS LDSLRPSPVL KCRRRPSGCL  420
IQEMPNGYSK VTWVEHVEVD DSSVHNIYKP LVNSGLAFGA KRWVGTLDRQ CERLASAMAS  480
NIPNGDLGVI TSVEGRKSML KLAERMVASF CGGVTASVAH QWTTLSGSGA EDVRVMTRKS  540
VDDPGRPPGI VLNAATSFWL PVPPAAVFDF LRDETSRSES ANSNQSNMLI LQESCTDASG  600
SYVVYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGPS GNAQAAVGEN GSGSGGGSLL  660
TVAFQILVDS VPTAKLSLGS VATVNSLIAC TVERIKAAVC RDSNPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0779930.0AB077993.1 Oryza sativa mRNA for Roc1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650023.10.0homeobox-leucine zipper protein ROC1 isoform X2
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A0D3GX190.0A0A0D3GX19_9ORYZ; Uncharacterized protein
STRINGOBART08G05070.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]