PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G23020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 31953 Da PI: 8.1419 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.7 | 2.8e-05 | 36 | 74 | 1 | 43 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaei 43 +r ++erE+ Rd+ N+ f+eL ll ++ + + Ka + OBART07G23020.1 36 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACV 74 68899**********************996....344455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-8 | 32 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-11 | 32 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.204 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MVPRDRVNAA AAGGGGEGRL VQSGIVNKKC DKKAPKRIHK SEREKLKRDK QNDLFNELGN 60 LLEPDRQNNG KACVLGETTR LLKDLLSQVE SLRKENSSLK NESHYVALER NELHDDNSML 120 RTEILELQNE LRTRMEGNPV WSHVNTRPAL RVPYPTTGVF PVQHLPHLPV TTTAAFPQQQ 180 PVIIEQHYAA MPRELQLFPE SATSEDSEPS QEHGISDHVT RPQARYPTPT ATLPVNLFPV 240 FPGRQDQQCS SGTSGTNEED RIGLLAKSVP VMLPRWPRGQ HTNHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070963 | 0.0 | AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence. | |||
GenBank | HQ858856 | 0.0 | HQ858856.1 Oryza sativa Japonica Group isolate UT1619 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645391.1 | 0.0 | transcription factor BHLH062-like | ||||
Refseq | XP_015645393.1 | 0.0 | transcription factor BHLH062-like | ||||
Swissprot | Q69V10 | 0.0 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A0D3GTU8 | 0.0 | A0A0D3GTU8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G23020.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-34 | bHLH family protein |
Publications ? help Back to Top | |||
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