 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART07G13980.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LSD |
| Protein Properties |
Length: 304aa MW: 33077.4 Da PI: 10.0548 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART07G13980.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 41.8 | 1.8e-13 | 202 | 226 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL+YP+GA+s++Ca+C tV
OBART07G13980.1 202 CSGCRNLLMYPAGATSICCAVCGTV 226
************************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MKAVAAARRG EPYIARLICR RARRQHGRST GATVDLDGSL TRQACHHTVL EPGRPSEGLV 60
LRPSSSSPSR SYKIGITPVN EKRVQPTTSP RSRTGVIVDR AILAEDKKHA PRSESPWLKK 120
PMHGVSGSTA MASTPWSSMP PSSHSLEQMA VLYVTFLREV DVGRGLVALC AHWLKLIVAL 180
LSTSLIYQEV LSSLGAQSQL VCSGCRNLLM YPAGATSICC AVCGTVTAVP APSMHIIHSE 240
QKSSCNVHEN KERLKGNTNG FRAPQRCARR VDGACTQVPN PLTLAMSLEK YTLKLLWSYL 300
HCCV
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK061509 | 1e-145 | AK061509.1 Oryza sativa Japonica Group cDNA clone:006-309-F08, full insert sequence. |
