PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART07G06320.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 1858aa MW: 197884 Da PI: 4.1071

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART07G06320.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	77.1	4.1e-24	9	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk....d 89 lppG+rF+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L + +++ ++ +fF++++ k+ +g+r++r + gyW+ + + OBART07G06320.1 9 LPPGLRFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HGRGDDAFFFAEARAKNGKGSRQKRtVEGGGYWQGQRMcvdgE 101 79**************************99***********744.4566799**************5555999776544323 PP NAM 90 kevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + v + e + k +L ++ ++ +kg ++ Wvmhey++ OBART07G06320.1 102 RLV--VpdgggggGVEIAWRKYVLSYF-AEGEKG-SSGWVMHEYAI 143 333..2357776333346677778888.555554.89*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-31	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	29.031	9	162	IPR003441	NAC domain
Pfam	PF02365	1.3E-14	10	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1858 aa Download sequence Send to blast
MAAAAGDGLP PGLRFEPKDD ELVARFLLAR IQGKPLPLHG VILDADPLCA PPWRLLADHG 60 RGDDAFFFAE ARAKNGKGSR QKRTVEGGGY WQGQRMCVDG ERLVVPDGGG GGGVEIAWRK 120 YVLSYFAEGE KGSSGWVMHE YAITSPADLA SSAMRLYRIR FSGHGKKRKR EPDSQSAHDE 180 HGRARCAPQI AMPETALPED SAPPPQPVHP PAAVVDCVCD VTDQGSSLVF PDQPGSIYED 240 ELQSFVPEFA ARNLFVSLPE GSRDVVAEAA LIEDLALSPQ PVPPPAEVVN QADDSDGADQ 300 GCSSVFAALP DLIVLPPEEA CGSGGAAPAP SWASSLDNQN DDAPAFFEFP ESMDDMVGCF 360 DFASMDNQSC TSAVSEIAVL EEPFLPPPTM VNHDNNSVSD GADQSCFGVG DNSTLVFSDL 420 TGSIDEDELQ SFVPEFVSLP QGSCEADAEA DSGGGVAPAQ FAEFGGPESM DDPLNFPAEA 480 SGGGDRAAPA SSWVSSQDNQ NDEAPMFFEL PESLDDMVGC FDFAAMDGQS CTSAVSGTAL 540 IEELVLPPAA MVNHHDDSVS DIADHGCSGA VPPPNSEVVD LPNDSVGADQ SCSGMVDDSL 600 SGYYEAELKD ASGGAGSMMS SPDKQKEHSS SGVMDVEATG FGVPDSMDGL SCIDFAETMD 660 DLSCIDFTID DEFPREVEDQ FHIYRLKDEI AAVVATIDKI YSHLQLDKGS LEKKNGFCFG 720 LLDPVTNILI NGAISELSPA TAAQAVVGGG GEKAKDLNNN AAPRVEAGGG SRKRRRRGDN 780 AADLSQRSLD GLTAFLTCLF PYLPDAEARL YLDAADADPI VASLLIIRRR GIREFDLSSQ 840 PTEAAVEVAL RCAAVVAKHP DPRSLVLGWK QLSPVVEALF GSAPSSPRET TMHVARRVLR 900 RLHKDNAAAD PVLRLEGSWE LAKRRLTRER LMGIYAGPKW LPPARAHMKR VLLATIHGFY 960 LQAMGRLPTS ELCDSYHRSM LMGGHCYGPL DPVSNIIVNT IWYEHNFPAS KQFPVAMIST 1020 TMLSCIVARS LYGLVSFLCT RYRGLTPDLA MQRLLVTGVN LKAADPNLSP TPSATSRKKR 1080 LDFSDCAQVL DNPDTSHIQH SVVEESTPSA GVDESYIAAA TAGFHGYPLA QQEFLASPTG 1140 LLSKLELVSE VLHIQVCVPG SQSASDGPLS PQKLSLLRTI LQRCPSSTGK LHQQQNVACR 1200 KEDHPFELHF ICGVNELVSG PVRSLGEKVG DYNPWTRDKY YHTHINFLAV CKARLYDPPT 1260 LFFAECGKDG ADTCCGHGKK RKREPESQSD NHQIAVAETA MLEDSAPPPQ PVHPPAAMVN 1320 CVSDDTDQGF SGAVPPPAPV VHHTNDSDVT DRYSSLVFSD QPGSIYEDEL QSFVPEFPAR 1380 NLFVSLPEGS HEAEPAQSVS SLADVGGPEN MDDQSCSGVV FANLPELIVL PSAPSLDNQN 1440 DEAPVFFEFP ESMDDIVGCF DFAAMDNQSC TSAIQEEPFL PPAAMVNHDD GYASNNADQG 1500 CSGAVPRPAA VVDLPNETDG ADQSCSGVGD NSTLLFSDVT GSIDEDELQS FVPEFAASNL 1560 FVSLPQGSCE ADAEADSGGG VAPAQFAEFG GSESMDDSSM MYPLNFPAEA GGGGGRAAPA 1620 SSWVSSQHNQ NDEAPMFFEL PESLDDMVGC FDFAAMDGQS CTSTVSETAL IEELVLPPAA 1680 MVNHHDDSVS DIADHGCSGS VPPPSAVVDL PNDSDQSCSG YYEAELKVPL EYATRNPVDS 1740 PAKGGNEAEV DASNGAGSMM SSPDKQKEHS SSGVMDVEAT GFGVPDSMDS LSCIDFAETM 1800 DDLSCIDFTI DDELLALASC DVEADAGKFG TALQQQLASY ATVFCFVCTF LFNSSLQF

Sequence ? help Back to Top

Protein Sequence Length: 1858 aa Download sequence Send to blast

MAAAAGDGLP PGLRFEPKDD ELVARFLLAR IQGKPLPLHG VILDADPLCA PPWRLLADHG  60
RGDDAFFFAE ARAKNGKGSR QKRTVEGGGY WQGQRMCVDG ERLVVPDGGG GGGVEIAWRK  120
YVLSYFAEGE KGSSGWVMHE YAITSPADLA SSAMRLYRIR FSGHGKKRKR EPDSQSAHDE  180
HGRARCAPQI AMPETALPED SAPPPQPVHP PAAVVDCVCD VTDQGSSLVF PDQPGSIYED  240
ELQSFVPEFA ARNLFVSLPE GSRDVVAEAA LIEDLALSPQ PVPPPAEVVN QADDSDGADQ  300
GCSSVFAALP DLIVLPPEEA CGSGGAAPAP SWASSLDNQN DDAPAFFEFP ESMDDMVGCF  360
DFASMDNQSC TSAVSEIAVL EEPFLPPPTM VNHDNNSVSD GADQSCFGVG DNSTLVFSDL  420
TGSIDEDELQ SFVPEFVSLP QGSCEADAEA DSGGGVAPAQ FAEFGGPESM DDPLNFPAEA  480
SGGGDRAAPA SSWVSSQDNQ NDEAPMFFEL PESLDDMVGC FDFAAMDGQS CTSAVSGTAL  540
IEELVLPPAA MVNHHDDSVS DIADHGCSGA VPPPNSEVVD LPNDSVGADQ SCSGMVDDSL  600
SGYYEAELKD ASGGAGSMMS SPDKQKEHSS SGVMDVEATG FGVPDSMDGL SCIDFAETMD  660
DLSCIDFTID DEFPREVEDQ FHIYRLKDEI AAVVATIDKI YSHLQLDKGS LEKKNGFCFG  720
LLDPVTNILI NGAISELSPA TAAQAVVGGG GEKAKDLNNN AAPRVEAGGG SRKRRRRGDN  780
AADLSQRSLD GLTAFLTCLF PYLPDAEARL YLDAADADPI VASLLIIRRR GIREFDLSSQ  840
PTEAAVEVAL RCAAVVAKHP DPRSLVLGWK QLSPVVEALF GSAPSSPRET TMHVARRVLR  900
RLHKDNAAAD PVLRLEGSWE LAKRRLTRER LMGIYAGPKW LPPARAHMKR VLLATIHGFY  960
LQAMGRLPTS ELCDSYHRSM LMGGHCYGPL DPVSNIIVNT IWYEHNFPAS KQFPVAMIST  1020
TMLSCIVARS LYGLVSFLCT RYRGLTPDLA MQRLLVTGVN LKAADPNLSP TPSATSRKKR  1080
LDFSDCAQVL DNPDTSHIQH SVVEESTPSA GVDESYIAAA TAGFHGYPLA QQEFLASPTG  1140
LLSKLELVSE VLHIQVCVPG SQSASDGPLS PQKLSLLRTI LQRCPSSTGK LHQQQNVACR  1200
KEDHPFELHF ICGVNELVSG PVRSLGEKVG DYNPWTRDKY YHTHINFLAV CKARLYDPPT  1260
LFFAECGKDG ADTCCGHGKK RKREPESQSD NHQIAVAETA MLEDSAPPPQ PVHPPAAMVN  1320
CVSDDTDQGF SGAVPPPAPV VHHTNDSDVT DRYSSLVFSD QPGSIYEDEL QSFVPEFPAR  1380
NLFVSLPEGS HEAEPAQSVS SLADVGGPEN MDDQSCSGVV FANLPELIVL PSAPSLDNQN  1440
DEAPVFFEFP ESMDDIVGCF DFAAMDNQSC TSAIQEEPFL PPAAMVNHDD GYASNNADQG  1500
CSGAVPRPAA VVDLPNETDG ADQSCSGVGD NSTLLFSDVT GSIDEDELQS FVPEFAASNL  1560
FVSLPQGSCE ADAEADSGGG VAPAQFAEFG GSESMDDSSM MYPLNFPAEA GGGGGRAAPA  1620
SSWVSSQHNQ NDEAPMFFEL PESLDDMVGC FDFAAMDGQS CTSTVSETAL IEELVLPPAA  1680
MVNHHDDSVS DIADHGCSGS VPPPSAVVDL PNDSDQSCSG YYEAELKVPL EYATRNPVDS  1740
PAKGGNEAEV DASNGAGSMM SSPDKQKEHS SSGVMDVEAT GFGVPDSMDS LSCIDFAETM  1800
DDLSCIDFTI DDELLALASC DVEADAGKFG TALQQQLASY ATVFCFVCTF LFNSSLQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	771	775	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004379	0.0	AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08.
GenBank	AP005257	0.0	AP005257.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0417F02.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D3GNC7	0.0	A0A0D3GNC7_9ORYZ; Uncharacterized protein
STRING	OBART07G06320.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP802	22	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	4e-14	NAC domain containing protein 47