PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G18520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 476aa MW: 51438.6 Da PI: 7.97 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99 | 6.8e-31 | 54 | 230 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+Ptd+el+ e+L++kv+ ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ OBART06G18520.1 54 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqppaaaa 145 799************.99*****988856665543333333766646**********.556667799******************88******* PP NAM 78 .................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v+ +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+l OBART06G18520.1 146 sssggggnasssssasaaaavarhghqqqqqqqRSETRWHKTGKTRAVVG-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 230 ****************************9998755789***********9.99************5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-35 | 48 | 138 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.384 | 54 | 249 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-15 | 55 | 230 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-35 | 184 | 249 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MDGVVAEDQA GGGGGGHRRL IGSRIEEHRK YMSEESCCPR CGHKIDRKLD WVGLPAGVKF 60 DPTDQELIEH LEAKVRPGGE AAAHPLIDEF IPTIEGEDGI CYTHPEKLPG VSKDGLSRHF 120 FHRPSKAYTT GTRKRRKIQP PAAAASSSGG GGNASSSSSA SAAAAVARHG HQQQQQQQRS 180 ETRWHKTGKT RAVVGGGRQR GCKKILVLYT NFGKHRKPEK TNWVMHQYHL GEAEEERDGE 240 LVVSKIFYQT QPRQCAAADA AATASASAVD RRTTSGRDRA AAAAAAAAAA APMASANVSV 300 AAFHGGAAGI DEFSFAQFRS SFEEAGMGAS SSDHQSAMVD QRRQQQQHDD DEHDHRRGGG 360 GHHYVGQQQS VAATFHVVSS PADPIARLMS PPPAHQGTVM LRQPEPPYIY HNQQEDERPH 420 QPRKFDGRST SGSGLEEVIM GCTSRRSKGG ETSGGKDGTE WQYPSFWPSD SQDHHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003713 | 0.0 | AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641894.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Swissprot | Q9M0F8 | 1e-119 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A0D3GHV4 | 0.0 | A0A0D3GHV4_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G18520.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-101 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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