PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G11000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YB | ||||||||
Protein Properties | Length: 198aa MW: 20689.1 Da PI: 5.2252 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 144.2 | 3.1e-45 | 29 | 109 | 1 | 81 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81 vreqdr++Pianv+rim++vlPa+akis+daket+qecvsefisfvt+ea+d+c+re+rkt++++dl+wa+ lGf+dyv+ OBART06G11000.1 29 VREQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEFISFVTGEANDRCHREHRKTVTAEDLVWAMDRLGFDDYVH 109 69*****************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.71E-32 | 16 | 108 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.0E-41 | 27 | 109 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-24 | 36 | 99 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.2E-9 | 63 | 81 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 66 | 82 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.2E-9 | 82 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEPAFPNGGA AAPPPPMAAE QPAAAAAVVR EQDRLMPIAN VIRIMRRVLP AHAKISDDAK 60 ETIQECVSEF ISFVTGEAND RCHREHRKTV TAEDLVWAMD RLGFDDYVHH PVYAAPGEPV 120 QGYGYPVAMS SALPAPHVHV GVRGGGQHEV FGGGPAPLAV YYGGAPYGEA SSRGGCSAAD 180 EGSSSSSASP APVGPNYE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 5e-48 | 29 | 108 | 6 | 85 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288035 | 1e-160 | AB288035.1 Oryza sativa Japonica Group OsHAP3D mRNA for HAP3 subunit of HAP complex, complete cds. | |||
GenBank | AK109660 | 1e-160 | AK109660.1 Oryza sativa Japonica Group cDNA clone:002-141-E08, full insert sequence. | |||
GenBank | AP004791 | 1e-160 | AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10. | |||
GenBank | AP014962 | 1e-160 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY062183 | 1e-160 | AY062183.1 Oryza sativa HAP3 transcriptional-activator (LEC1A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642670.1 | 1e-106 | nuclear transcription factor Y subunit B-10-like | ||||
Swissprot | Q84W66 | 9e-47 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A0D3GFE0 | 1e-140 | A0A0D3GFE0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G11000.1 | 1e-141 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 6e-48 | nuclear factor Y, subunit B6 |