PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G05260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 26362.7 Da PI: 8.0661 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.2 | 5.2e-10 | 190 | 237 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +W + E+e l ++v+q+G+g+Wk I + gR + ++k++w++ OBART06G05260.1 190 KWCALEEETLRKGVEQYGNGNWKDILTNNPdvfIGRKAMDLKDKWRNM 237 68888****************************99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.122 | 183 | 239 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-12 | 183 | 239 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.11E-13 | 185 | 238 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.86E-16 | 189 | 239 | No hit | No description |
Pfam | PF00249 | 6.0E-8 | 190 | 237 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAAERIVGDG AIETWRAADE VTRAKYRLLA GEQRAREIEG KLGETIPQGN QISTPEVHKV 60 MDALKSSCAN LHSVVEDPLP AAKAAADEVL AARMDKAVDL NAGEVSNQPT ACDIAGPSAP 120 ADNLDAPRKG TAASLMDWNP TARTFQWEDS PDPDGSRSPI HRPQLPSPRR TTFSPLQPAD 180 NKAKRRKARK WCALEEETLR KGVEQYGNGN WKDILTNNPD VFIGRKAMDL KDKWRNMMR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY429017 | 0.0 | AY429017.1 Oryza sativa (japonica cultivar-group) ANTHER INDEHISCENCE1 (AID1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641699.1 | 1e-176 | uncharacterized protein LOC4340310 | ||||
TrEMBL | A0A0D3GDH9 | 1e-175 | A0A0D3GDH9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0PU99 | 1e-175 | A0A0E0PU99_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6T804 | 1e-174 | Q6T804_ORYSJ; ANTHER INDEHISCENCE1 | ||||
STRING | ORUFI06G05310.1 | 1e-176 | (Oryza rufipogon) | ||||
STRING | OBART06G05260.1 | 1e-176 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3154 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 2e-12 | TRF-like 5 |