PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G04680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 232aa MW: 24664.2 Da PI: 11.287 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 33.5 | 1.4e-10 | 10 | 46 | 22 | 57 |
YABBY 22 lavsvPstslfkvvtvrCGhCts.llsvnlakasqll 57 l vsvPs+slfk+vt rCGhC+s +l+vn++ + OBART06G04680.1 10 LQVSVPSSSLFKTVTARCGHCSSqFLTVNIRGLLLPT 46 89*******************8537999988766444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.4E-9 | 5 | 48 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MACVCWVCGL QVSVPSSSLF KTVTARCGHC SSQFLTVNIR GLLLPTSAAA GGRALPHSLN 60 LAPPANPPHH HSLLDEILTA SSPTQLLLEQ HGLGGLMASA ASCRNNNVCR NNKKTIAFLR 120 WALRPLPSSA PGTSASAPGS PRSWSPSSPV SPRASAHATT SSLVRMAVIN FLCVPTRSSD 180 PSAKRGQRKG EKRGKREMTT WHPTMWDPRG SHADSAVTWD KTGVNTRVTG FI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 1e-136 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3GDB2 | 1e-166 | A0A0D3GDB2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G04680.1 | 1e-167 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18934 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.2 | 7e-10 | YABBY family protein |