PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G25910.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 282aa    MW: 30287.7 Da    PI: 8.2477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G25910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18125175356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+++AeIrd +    r +r++lg+f ta+eAa a++ a+++++g+
  OBART05G25910.1 125 YRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATADEAALAYDMAALRMRGH 175
                      9*******.**********433...24**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-14124175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-30124183IPR001471AP2/ERF domain
SMARTSM003805.9E-34124188IPR001471AP2/ERF domain
PROSITE profilePS5103223.248124182IPR001471AP2/ERF domain
PRINTSPR003672.8E-10125136IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21125183IPR016177DNA-binding domain
CDDcd000182.30E-21132182No hitNo description
PRINTSPR003672.8E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAIGAAPASN QPHDTSNILE NVWASIMTSS SSPAVSSSVA VSSSAVTGQE ENSAILQRLP  60
SLGRWISMGA EEWDELLLSG AALASESSGE LQLVAASPGD HNQVVGGGGG ANYRTTATAA  120
ARRSYRGVRR RPWGKFAAEI RDTRRRGARV WLGTFATADE AALAYDMAAL RMRGHRAHLN  180
FPLATVQKHL ERDLAGGRSS SDQTSTRARR RRRPRANTTT DAAARSIVFS GVQTATNCDH  240
MVSFASEKDQ VSMQECSKSD AGVIDFEEIG GEYWDYLFPP LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-26123183464ATERF1
3gcc_A9e-26123183464ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241430.0AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655590.11e-119PREDICTED: ethylene-responsive transcription factor ERF094-like
TrEMBLA0A0D3GAV50.0A0A0D3GAV5_9ORYZ; Uncharacterized protein
STRINGOBART05G25910.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.17e-12ERF family protein