PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G29140.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 649aa    MW: 73679.9 Da    PI: 5.3179
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G29140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-065476427
                     ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                     ++C +f + G C  GdrC F Hgp
  OBART04G29140.1 54 VPCYYFKK-GNCLKGDRCAFYHGP 76
                     689*9999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.38126IPR000571Zinc finger, CCCH-type
SMARTSM003560.45225IPR000571Zinc finger, CCCH-type
PfamPF146083.4E-5524No hitNo description
PROSITE profilePS5010314.5025077IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.45E-55175IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-55176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-55577IPR000571Zinc finger, CCCH-type
PfamPF146081.45575No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MNPRDCWYWL NSNCLNPKCP FRHPPIDGMF GAPTTGMPAV SSHYAPFNSG KQLVPCYYFK  60
KGNCLKGDRC AFYHGPQSVG NNPSEQVVKV SSLPLEQLQT QKNDLLGIKD SVQSTNSIQH  120
GAPITNERGK TAVDRSTVNS ARTATVAIPV ASNAMSCPKS EKVKNSTPAA LKESFTTSSG  180
GDHPECYQNH FPMDSDPVRD WNQSYEMPPA DDLPQNSREA DELLGESSPG FDVLVDNDAD  240
GAAYLHDEDF GGDMYPVEDY EYAPADFNVR AHHEREQFNG MDEQDQMGHM YDGYERKRRR  300
SSERSMERPF HSERRFLQRD RDRVEMDGSD LRHRLRRRRI NESSLAISPE CNGEQRRRDE  360
RYRERAHGHR SHRDHHQSSR GSTLSSRLQG RIKLPGRSPD RVDTRSEKER DRRRLRDRLS  420
PVRRTEFQGT RHREAGQHEE QTQRRSSELA LGSRNADGQH LTKDVPDSHN FPHRKNLRDS  480
SKANGSVEPE ASLDFEGPKP LSVILQRKRE AAWANGTSAC SPKQDKSTEV SHRQASLAEA  540
EKEGDNIISS DEYKSGSGDE EFRDEGHIPV EGHGQSSSHG DKLEAEDIIE VDPVENQDAD  600
NYDQREGESY YEPIEGQDYK SDDENAYEDD DEEYDDDDDF ARKVGVVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295299RKRRR
2295300RKRRRS
3411418RRRLRDRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708570.0AK070857.1 Oryza sativa Japonica Group cDNA clone:J023066C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636581.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D3G1I50.0A0A0D3G1I5_9ORYZ; Uncharacterized protein
STRINGOBART04G29140.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]