PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G02090.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 346aa MW: 35384 Da PI: 5.8883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G02090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.0008	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H OBART04G02090.1 245 HECSICGAEFASGQALGGHMRRH 267 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	6.9E-11	135	160	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.96E-8	135	158	No hit	No description
PROSITE profile	PS50157	10.201	136	163	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.24	136	158	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.96E-8	240	267	No hit	No description
Pfam	PF13912	1.5E-12	244	268	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.263	245	272	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	245	267	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	247	267	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGVQEEAALA AAVVKGKRSK RQRAHAAAAV VVPIAASATA EEEESMESSL SLSGGAAAEG 60 SSTTSPLLTT TTTARGDEAV SGCVTEEEED MALCLMLLAS GGHGERALDA EAAVAKEAKF 120 RSRRPADGAG AGEFVYECKT CSKCFPSFQA LGGHRTSHKK PRLVAPPATT EPAADDKVKP 180 AIPETAAAAA AEEKPPKPSP PRPPASRPIA TDPTVLAIPV IPKQEVLDAN SAAAIASVSK 240 QPRVHECSIC GAEFASGQAL GGHMRRHRPL IPASASSAVV SVLDAVDAPR QKEKSLLELD 300 LNMPAPCDDA AAETTTSSAA TSPAFAFAVS DRSPLLVPAA LVGCHY

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGVQEEAALA AAVVKGKRSK RQRAHAAAAV VVPIAASATA EEEESMESSL SLSGGAAAEG  60
SSTTSPLLTT TTTARGDEAV SGCVTEEEED MALCLMLLAS GGHGERALDA EAAVAKEAKF  120
RSRRPADGAG AGEFVYECKT CSKCFPSFQA LGGHRTSHKK PRLVAPPATT EPAADDKVKP  180
AIPETAAAAA AEEKPPKPSP PRPPASRPIA TDPTVLAIPV IPKQEVLDAN SAAAIASVSK  240
QPRVHECSIC GAEFASGQAL GGHMRRHRPL IPASASSAVV SVLDAVDAPR QKEKSLLELD  300
LNMPAPCDDA AAETTTSSAA TSPAFAFAVS DRSPLLVPAA LVGCHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833697	0.0	CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634434.1	1e-148	zinc finger protein ZAT5
TrEMBL	A0A0D3FSE4	0.0	A0A0D3FSE4_9ORYZ; Uncharacterized protein
TrEMBL	I1PIY4	0.0	I1PIY4_ORYGL; ZOS4
STRING	ORGLA04G0015300.1	0.0	(Oryza glaberrima)
STRING	OBART04G02090.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	7e-27	C2H2 family protein