PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G00200.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 849aa    MW: 92181.6 Da    PI: 5.1783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G00200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-075485127
                     --S---SGGGGTS.....--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.....tCkyGdrCkFaHgp 27
                     +kt+lC+ff+r        C++Gd+C++aH++
  OBART04G00200.1 54 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 85
                     8**********88*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.8E-125091IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-65190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3385386IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-55485IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3301.4E-5146200IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168744.458244849IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.33E-49246272IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.33E-49304407IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.33E-49466593IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.6E-63489593IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.1E-9533595IPR025714Methyltransferase domain
CDDcd024402.12E-7539593No hitNo description
Gene3DG3DSA:3.40.50.1503.6E-63732789IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.33E-49737849IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.0E-6742785IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300745777IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1503.6E-63824849IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
METEMEMEDN KAPSPPPPME SDIAGEKRKR EDDESSSAVL AAANNTAGAQ HPMWKTSLCS  60
FFRRRAASSA DGCSHGDSCR YAHSEEELRP RPDGTWDPTS DRAKKLRKVA AEEVEEEVVT  120
VDDKALDKCL VGLPRAWSKS PLTSKKGISY ATAKKKKGMT VGFVTFENIE QLKNAIEVLT  180
ENQSGGKEIK IADANRRSHQ KLHTEKPVSD NGVATENGTS VDVPPGETSA PEAAISNKKS  240
VRDAVTPLAH MSYNDQLEHK KNSVAQILKR LTRNARKACP TGIPLPDWVF KSKEIGGLPC  300
KLEGILESPV INGYRNKCEF SVGFSLEGKK TVGFMLGNFR EGVTAVEEPV DCPNVSEISC  360
KYALIFQDFL QSSSLPVWNR VDNCGFWRQF TVREGRCRAQ PVAQNAETQI SEVMLIVQVC  420
STGVDDALMK DEFDKLTVAL QQGAATCSPP LPLTTIVVQD HKGISNAAPA DCPLIPLLVP  480
KVDQSEGTVD KTRIHDHIGN LRFSISPTAF FQVNTLAAER LYTLAGDWAN LNSGTLLFDV  540
CCGTGTIGLT LAHRVGMVVG IEMNESAVSD AERNALINGV SNCRFVCGKA EDVMGSLLTE  600
YLGSPQQDIP VSEGAVSGTV KDEEVIDGSK NSGENLDSSM QKNDNGESQQ LGDAPADSSS  660
SAIDEIKGNS NDRVGNGLKG SHDEYNEVAG EDIHGEASLI NESVDLKVSD CLEDRKTSDD  720
GSSISNNDVT AATACQFEDI VAIVDPPRVG LHPTVIKALR THPRIRRLVY ISCNPDSLVA  780
NAIELCTPSS ERQEKNKGNR GWRTMSSAGL ARQRTKSMPN SEPFVPKRAM AVDLFPHTSH  840
CEMVMLFER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-16503600274371Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-16503600274371Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-16503600274371Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-16503600274371Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-16503600274371Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-16503600275372Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-16503600274371Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-16503600274371Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-16503600274371Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-16503600275372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201560.0AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636996.10.0zinc finger CCCH domain-containing protein 24 isoform X1
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0D3FRT50.0A0A0D3FRT5_9ORYZ; Uncharacterized protein
STRINGOBART04G00200.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]