PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G35620.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 604aa    MW: 63301 Da    PI: 7.1997
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G35620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.21.8e-12303359155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  OBART03G35620.1 303 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 359
                      78*******************77776664346655.77******************98 PP
2AP2483.1e-15402453155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  OBART03G35620.1 402 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 453
                      57****************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-9303359IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-14303368IPR016177DNA-binding domain
CDDcd000187.35E-17303367No hitNo description
Gene3DG3DSA:3.30.730.101.3E-12304368IPR001471AP2/ERF domain
SMARTSM003808.3E-23304373IPR001471AP2/ERF domain
PROSITE profilePS5103217.359304367IPR001471AP2/ERF domain
PRINTSPR003673.3E-6305316IPR001471AP2/ERF domain
PfamPF008471.6E-10402453IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18402462IPR016177DNA-binding domain
CDDcd000182.96E-23402463No hitNo description
PROSITE profilePS5103219.137403461IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18403461IPR001471AP2/ERF domain
SMARTSM003803.9E-34403467IPR001471AP2/ERF domain
PRINTSPR003673.3E-6443463IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MASGNSSSSS GSMAATAGGV GGWLGFSLSP HMATHCAGGV DDVGHHHHHH VHQHQQQHGG  60
GLFYNPAAVA SSFYYGGGHD AVVTSAAGGG SYYGAGFSSM PLKSDGSLCI MEALRGGDQE  120
QQGVVVSASP KLEDFLGAGP AMALSLDNSA FYYGGHGHHQ GHAQDGGAVG GDPHHGGGGF  180
LQCAVTHDAA YAHAALVHDQ SAAAMAAGWA AMHGGGYDIA NAAADDVCAA GPIIPTGGHL  240
HPLTLSMSSA GSQSSCVTVQ AAAAGEPYMA MDAVSKKRGG ADRAGQKQPV HRKSIDTFGQ  300
RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQGGY DMEEKAARAY DLAALKYWGP  360
STHINFPLED YQEELEEMKN MSRQEYVAHL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI  420
GRVSGNKDLY LGTFSTQEEA AEAYDVAAIK FRGLNAVTNF DITRYDVDKI LESSTLLPGE  480
LARRKGKVGD GGGAAAVADA AAALVQAGNV AEWKMATAAA LPAAARTEQQ QQHGHGGHQH  540
HDLLPSDAFS VLQDIVSTPA AASKLYSPVP LNTWASPSPA VSSVPARAGV SIAHLPMFTA  600
WTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417120.0AK241712.1 Oryza sativa Japonica Group cDNA, clone: J065197H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879550.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z021e-143CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D3FPK40.0A0A0D3FPK4_9ORYZ; Uncharacterized protein
STRINGOBART03G35620.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-130AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]