PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G29020.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 315aa    MW: 33028.5 Da    PI: 5.1882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G29020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-16166211555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR++iN++f eL  ++Pk+     kK++Ka+iL  Av YI++Lq
  OBART03G29020.1 166 HVVAERKRREKINQRFMELSAVIPKL-----KKMDKATILSDAVSYIRELQ 211
                      8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.742161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-19165222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-18165227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-17166215No hitNo description
PfamPF000105.8E-14166211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-17167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDDSSLFLPV STLQHQHPAA VAVVADDDAT FFSFQELCDA EEVVVVPVQE EVITEAHGGG  60
ASSCRSTGNV GGGGGIGLAV AVDEHGGWSR SPNPGARPPS GGCGSNNLPL MSWDFSAASV  120
AVQVQPNGGG GGGAPEMAYG SPPAAGGSTT RKTSAPTAAA YAQLEHVVAE RKRREKINQR  180
FMELSAVIPK LKKMDKATIL SDAVSYIREL QEKLKALEEQ AAARVTEAAM ATPSPARAMN  240
HLPVPPEIEV RCSPTNNVVM VRIHCENGEG VIVRILAEVE EIHLRIINAN VMPFLDQGAT  300
MIITIAAKAS SSLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14164220763Transcription factor MYC2
5gnj_B1e-14164220763Transcription factor MYC2
5gnj_E1e-14164220763Transcription factor MYC2
5gnj_F1e-14164220763Transcription factor MYC2
5gnj_G1e-14164220763Transcription factor MYC2
5gnj_I1e-14164220763Transcription factor MYC2
5gnj_M1e-14164220763Transcription factor MYC2
5gnj_N1e-14164220763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
2170175RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1163690.0AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBankAC1467180.0AC146718.2 Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880235.11e-144LOW QUALITY PROTEIN: transcription factor NAI1
TrEMBLA0A0D3FM930.0A0A0D3FM93_9ORYZ; Uncharacterized protein
STRINGOBART03G29020.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.22e-26bHLH family protein