PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G24690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 500aa MW: 53864.2 Da PI: 3.9551 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.7 | 3.6e-26 | 7 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 l pG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+L + +++ +e +fF++++ k+ +gkr++r + g+W+ + d e OBART03G24690.1 7 LLPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTLLAD-HTRGDEAFFFAEARAKNGKGKRQKRtVEGGGFWQGQRMavDGE 99 579***************************999**************743.456789*******************555599**9665522222 PP NAM 92 vlsk..........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 + + ++ k +L f+ ++ ++g ++ Wvmhey++ OBART03G24690.1 100 R--LvvpgddggggG--DegleiTWRKYVLSFF-AEGERG-SSGWVMHEYAV 145 2..133456666550..155565899999****.444454.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-32 | 4 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.067 | 7 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-16 | 9 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MAGADGLLPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTLLADHTRG 60 DEAFFFAEAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGDDGGG GGDEGLEITW 120 RKYVLSFFAE GERGSSGWVM HEYAVTSPAD LASSQLRLYR VRFSGHGKKR KREPQCLDSH 180 DDDDDGGDQE SATHRRAVAE TTLFDGYVPR PAADGTDQGT YGVIDGESSL ASHCLPDQIV 240 PPAEVDATAG VENPLLDEER WSPPQPALVK QNSYDLMAIS SLLFSDLPDR IDDDDLSVSQ 300 TEGTELSEQG SSGVIGDDYW RVFHGLSDLI ALPEVEADAT GGAETEKISL LDEERRPPPQ 360 PAPPTAALVP PLQGQSSYDL MADSSLLFAD LPGSIDDDEL QRSLRASDMP DQFLAQTEEA 420 GAGGGGGAAA ALNKQSNSSP LGVEVPMALS DLESPESMPL SDLEFPESID EVLSYIAFTT 480 DDTSCLDFDM DELFSDMPAD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135502 | 0.0 | AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
GenBank | JN982314 | 0.0 | JN982314.1 Oryza sativa Japonica Group NAC transcription factor 69 (NAC69) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630217.1 | 0.0 | NAC domain-containing protein 82 | ||||
TrEMBL | A0A0D3FKW3 | 0.0 | A0A0D3FKW3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G24690.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 6e-14 | NAC domain containing protein 94 |