PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G19880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1031aa    MW: 115327 Da    PI: 6.3208
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G19880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.14.5e-55231374118
             CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                        krwl+++ei++iL n+++++l+ e+++rp sgsl+L++rk +ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqrr
  OBART03G19880.1  23 AGKRWLRPTEICEILSNYRSFSLSPEPPNRPGSGSLFLFDRKTLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQRR 116
                      479******************************************************************************************* PP

             CG-1  98 cywlLeeelekivlvhylevk 118
                      +ywlLee++++ivlvhylevk
  OBART03G19880.1 117 TYWLLEEDFTHIVLVHYLEVK 137
                      ******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.43616142IPR005559CG-1 DNA-binding domain
SMARTSM010761.9E-7419137IPR005559CG-1 DNA-binding domain
PfamPF038599.5E-4923136IPR005559CG-1 DNA-binding domain
CDDcd001020.00522449537No hitNo description
Gene3DG3DSA:2.60.40.102.3E-7450526IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.89E-17450536IPR014756Immunoglobulin E-set
PfamPF018331.2E-7450535IPR002909IPT domain
SuperFamilySSF484031.35E-17626741IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.8E-18631742IPR020683Ankyrin repeat-containing domain
CDDcd002041.10E-13641739No hitNo description
PROSITE profilePS5029719.067647741IPR020683Ankyrin repeat-containing domain
PfamPF127965.9E-8652742IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.778680712IPR002110Ankyrin repeat
SMARTSM002480.061680709IPR002110Ankyrin repeat
SMARTSM00248500719748IPR002110Ankyrin repeat
SuperFamilySSF525409.56E-9847905IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0082854876IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791855884IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055856875IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0051877899IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.267878902IPR000048IQ motif, EF-hand binding site
PfamPF006123.1E-4880899IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MAETRKFLMP NQPPDISQMV LEAGKRWLRP TEICEILSNY RSFSLSPEPP NRPGSGSLFL  60
FDRKTLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGVK QSFSRAKEEI MQLSGADSPS CSNSITSQNQ MTPQIMDAAE  180
SPISGQISEY EGAEPAKFGA ADNCRASSRY NPLIEMQQPL DGIVMDNILY PSSSAICNQV  240
SGYHGELPPG TSNLNGHTFS HSDIARMFDD SSSGLRDISR TLFDSMPYDE HFSGYANGFM  300
EPTLHSSFSM IEANNLEDSS LLETYTAEAL YTNNLSQKEA DALSFAGISS PEVNGNKYTE  360
GSTKHPLLKQ LSLDLFKIES SGLKKHDSFS RWMSKELGEV VDLGIKSSSD ALWSSIEIVN  420
AADGPSAPTN EQLDAYAVSP SLAQDQLFSI LDISPSCSYI GLKTKVLVTG TFLASKENVE  480
NCKWSCMFGD VEVPAEVLAD GSLRCYAPEH QSGRVPFYVT CSNRIACSEV REFEYRDSDA  540
QYMETSHSQA NGINEMHLQI RLEKLLTLGP DDNQLLVCGN EKLELINAIN SLMLDEKWSD  600
QGSLSGSKDV VTPRNQSLKK LMKEKLHCWL IYKIYDCEKG PNILGKEGQG IIHLAAALGF  660
DWAIRPILVA GVNVNFRDAH GWTALHWAAS CGRERTVGVL IANGAAAGAL TDPTSEFPSG  720
RTPADLASTN GHKGIAGFLA ESALTSHLSA LTLKESKDSN AEEACRLTIP EDLPEMNYGQ  780
LAVQDSHAES LKDSLSAVRK SAQAAARIFQ AFRVESFHRK KVVEYGDDDC GLSDEHTFSL  840
ISLQKVKQGQ HDTRLHSAAV RIQNKFRGWK GRKEFMIIRQ RIVKLQAHVR GHQVRKNYKK  900
VVWSVGIVEK VILRWRRKGR GLRGFRPEKQ LEGQTQIQPA KTEDEYDYLQ DGRRQAEGRL  960
QRALDRVRSM TQYPEAREQY RRLTTCVAEM QQSRMMQDEM LSEAAGADGS DFMNGLEDLI  1020
CRDDPQMSAI W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703500.0AK070350.1 Oryza sativa Japonica Group cDNA clone:J023052K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631089.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A0D3FJA60.0A0A0D3FJA6_9ORYZ; Uncharacterized protein
STRINGOBART03G19880.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1