PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G02630.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 316aa    MW: 34927.3 Da    PI: 7.7186
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G02630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.46.1e-49191453128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPt+eel+++yL + v gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s+ 
  OBART03G02630.1  19 PGFRFHPTEEELLDFYLSRVVLGKKLHF-NIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGNGGRPNRTTERGFWKATGSDRAIRSSg 111
                      9*************************99.89***************888999****************************************97 PP

              NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++glkktLvfy+grap+g+ktdWvm+eyrl
  OBART03G02630.1 112 dPKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 145
                      66778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5811170IPR003441NAC domain
PROSITE profilePS5100555.55217170IPR003441NAC domain
PfamPF023658.4E-2519145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAAAVAVAGP SMEVEQDLPG FRFHPTEEEL LDFYLSRVVL GKKLHFNIIG TLNIYRHDPW  60
DLPGMAKIGE REWYFFVPRD RKAGNGGRPN RTTERGFWKA TGSDRAIRSS GDPKRVIGLK  120
KTLVFYQGRA PRGTKTDWVM NEYRLPDYGA ARAAAPPPKE DMVLCKIYRK ATPLKELEQR  180
ASAMEEMQRG SSHGDYTATR ASLVHDASAS TGDDYFSSDD VHDSGFLIQS SSSSAAPSGS  240
SSKNGGAGAP REAKKEEADV TVTVASATSL QLPAVSQLPS LQLPAMDWLQ DPFLTQLRSP  300
WQDQHCLSPY AHLLYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-501917219167NO APICAL MERISTEM PROTEIN
1ut4_B8e-501917219167NO APICAL MERISTEM PROTEIN
1ut7_A8e-501917219167NO APICAL MERISTEM PROTEIN
1ut7_B8e-501917219167NO APICAL MERISTEM PROTEIN
3swm_A1e-491917222170NAC domain-containing protein 19
3swm_B1e-491917222170NAC domain-containing protein 19
3swm_C1e-491917222170NAC domain-containing protein 19
3swm_D1e-491917222170NAC domain-containing protein 19
3swp_A1e-491917222170NAC domain-containing protein 19
3swp_B1e-491917222170NAC domain-containing protein 19
3swp_C1e-491917222170NAC domain-containing protein 19
3swp_D1e-491917222170NAC domain-containing protein 19
4dul_A8e-501917219167NAC domain-containing protein 19
4dul_B8e-501917219167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070900.0AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630174.10.0NAC domain-containing protein 22-like
SwissprotQ10S650.0NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0D3FDG00.0A0A0D3FDG0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NPA50.0A0A0E0NPA5_ORYRU; Uncharacterized protein
TrEMBLA2XC490.0A2XC49_ORYSI; Uncharacterized protein
TrEMBLI1P7970.0I1P797_ORYGL; Uncharacterized protein
STRINGORUFI03G02380.10.0(Oryza rufipogon)
STRINGOS03T0133000-010.0(Oryza sativa)
STRINGORGLA03G0024300.10.0(Oryza glaberrima)
STRINGOBART03G02620.10.0(Oryza barthii)
STRINGOBART03G02630.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.17e-88NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]