PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G36490.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 276aa    MW: 30997.2 Da    PI: 9.0237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G36490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-105885431
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkas 31
                      hn  E+rRR+riN+++  L++l+P++s
  OBART02G36490.1 58 VHNLSEKRRRSRINEKMKALQSLIPNSS 85
                     6*************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-95186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.62954140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-105785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-65786No hitNo description
PfamPF000101.9E-75885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MMDGRGSQEE EHLDLIMRHH ASMGLDRCES EEALGSSESE QPTRPARPRG KRSRAAEVHN  60
LSEKRRRSRI NEKMKALQSL IPNSSKMLSM RNGLYVPPVN LSGAPEHLPI PQMSAALDQN  120
SAKASDPSVV LQPVNQTSGA LLPFELASQH KPLFLPGVPN ATALEPRFLV ESSRSNLQSL  180
RFTEPAEMIY PDEMMLKHRL TSANESTIVP GTDEKSVRQN TYMMNADRFD RYALSKDQLQ  240
HIMPKNTESV LDMPHLQRLQ TSDTKVRVEG RIKVNP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-170CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627242.10.0transcription factor SPATULA isoform X1
RefseqXP_015627243.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0D3FBS80.0A0A0D3FBS8_9ORYZ; Uncharacterized protein
STRINGOBART02G36490.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-15bHLH family protein