PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G20940.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 429aa MW: 45053 Da PI: 6.1869

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G20940.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.7e-12	205	250	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ L+el+P++ K +Ka++L + ++Y+k Lq OBART02G20940.2 205 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 250 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.29E-13	198	254	No hit	No description
SuperFamily	SSF47459	3.14E-16	198	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.06	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-16	202	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	205	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-13	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MDDDGGAAML GALEPCAMPL TDSGGPPVIC SSSSNDSSGS EHSAAMPAGG GFLVGEQQQH 60 VPPAAYAAGG VLPSMAAGEE TPQSFGFGSL FNGDLLQEAN VSKYHHQQQQ QLGVVPSSQP 120 HHLNEFSSGL HHLNLSSLIS GPLASFNATQ SHRQPAEACG GKNGCAAPFV NLSEVLPKGN 180 GSGSAGNGAP KPRVRARRGQ ATDPHSIAER LRREKISDRM KDLQELVPNS NKTNKASMLD 240 EIIDYVKFLQ LQVKVCVPPQ PLVFTAMFVS IDKLFSASVL MPLLSLKVLS MSRLGAAEAV 300 VPLLTETQTE SPGLLLSPRS SSGERQAGAV TGGLPGDQPE LLDGGAMFEQ EVVKLMEDNM 360 TAAMQYLQSK GLCLMPVALA SAISAQKGTS SAAVRPEKKN GGDEEDVKGE FDAPRRPPVG 420 RPKEMRSRV

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MDDDGGAAML GALEPCAMPL TDSGGPPVIC SSSSNDSSGS EHSAAMPAGG GFLVGEQQQH  60
VPPAAYAAGG VLPSMAAGEE TPQSFGFGSL FNGDLLQEAN VSKYHHQQQQ QLGVVPSSQP  120
HHLNEFSSGL HHLNLSSLIS GPLASFNATQ SHRQPAEACG GKNGCAAPFV NLSEVLPKGN  180
GSGSAGNGAP KPRVRARRGQ ATDPHSIAER LRREKISDRM KDLQELVPNS NKTNKASMLD  240
EIIDYVKFLQ LQVKVCVPPQ PLVFTAMFVS IDKLFSASVL MPLLSLKVLS MSRLGAAEAV  300
VPLLTETQTE SPGLLLSPRS SSGERQAGAV TGGLPGDQPE LLDGGAMFEQ EVVKLMEDNM  360
TAAMQYLQSK GLCLMPVALA SAISAQKGTS SAAVRPEKKN GGDEEDVKGE FDAPRRPPVG  420
RPKEMRSRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241924	0.0	AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623831.1	0.0	transcription factor bHLH68
TrEMBL	A0A0D3F6J4	0.0	A0A0D3F6J4_9ORYZ; Uncharacterized protein
STRING	OBART02G20940.2	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3254	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	3e-48	LJRHL1-like 3