PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G41230.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 293aa MW: 32002.9 Da PI: 4.4723 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 266 | 289 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+k+F++++ L+ H + H OBART01G41230.2 266 YACKPCNKTFNTSMGLEAHSKAkH 289 78999**************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 12.196 | 266 | 293 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 268 | 289 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
METTMGFWGV AVRPGETVMC DPPGEFYYHI SQIALEPGEL NENVQVFVEV DGKRILLGTL 60 SVEHRDESDE EVPLAIPLFP NSDDDKIKEV QNSPSKFATL KSAAAASPTP EAIVEERNNY 120 GKSEADDDDS DEESDASGED EYDDDEDMID KQDSSDDDGD SSDEEETPSK NTKGTNRHVE 180 TPLNTPPQKR ARLATPIMDS KAGTGKRSGY VHVATPYPAK QAKKTPVNND MAKQSSGYVH 240 VATPYPAKQA KKRTANNDMS EHSAGYACKP CNKTFNTSMG LEAHSKAKHT ATK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241121 | 1e-174 | AK241121.1 Oryza sativa Japonica Group cDNA, clone: J065094J12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694821.1 | 1e-125 | PREDICTED: histone deacetylase HDT2-like | ||||
TrEMBL | A0A0D3EXN3 | 0.0 | A0A0D3EXN3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G41230.2 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11173 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 3e-11 | histone deacetylase 2C |