PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G17870.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 175aa MW: 18162.8 Da PI: 8.3315

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G17870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.1	4.9e-06	34	75	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR+ + ++eL llP++ ++ s i+e+A+ ++ +L OBART01G17870.1 34 ERARRQTVSRLYAELGALLPNL----PPRASTTRIVEEAIACVGEL 75 9******************6....389********9887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.34	25	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-7	30	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-5	33	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.8E-4	119	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MAEEDNLALS VVCERSPGTA VEAASGRPPK AGSERARRQT VSRLYAELGA LLPNLPPRAS 60 TTRIVEEAIA CVGELRAKTA ELEAYSAVAA GRAARDGAAE VVASGKTSCF AVWLRAARAR 120 PGALTRVLEV FQRHGVAVLA ATVARDGEET AVTVTTAAVA PRVLETIKAE IICAA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004222	1e-178	AP004222.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1003B09.
GenBank	AP014957	1e-178	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-178	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878346.1	2e-86	uncharacterized protein LOC112937659
TrEMBL	A0A0D3EPK4	1e-116	A0A0D3EPK4_9ORYZ; Uncharacterized protein
TrEMBL	I1NNM1	1e-116	I1NNM1_ORYGL; Uncharacterized protein
STRING	ORGLA01G0146100.1	1e-116	(Oryza glaberrima)
STRING	ORGLA11G0204500.1	1e-116	(Oryza glaberrima)
STRING	OBART01G17870.1	1e-116	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9141	19	31