PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G17580.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 541aa    MW: 58643.8 Da    PI: 9.1673
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G17580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57341.63.4e-13288378397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      f r w+ +Dei++L +l+d   + g  p++     f+e v++    ++++s++ eK+r+LK+++++ v         +++k+hd +  els  i
  OBART01G17580.1 288 FGRKWNGNDEIMILEALVDQIRSGGNVPQEpGHPLFHELVQRLEGRTFNHSDVREKVRSLKRRYNDVVLS-----GLAITKDHDLQLHELSCEI 376
                      6799****************999999998845556777777777789********************999.....789**************** PP

           DUF573  96 Wg 97 
                      Wg
  OBART01G17580.1 377 WG 378
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-12288378IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MAPKRVRVAR SPSSPLPSSS SPSGGDSPQI DNAAEVAASC CGPAPSTADA RCRIGGGGRR  60
SRQGRGRRPA QGDSALPRSG SGFGSGNAAA PDGPAKSPMK PKKRVTAPPS SDHGSRENLA  120
AGSPSNEVPA PQGDDAAQED DLPESPPKSK KNRKKKKKAL RAGDSGKVAA PDDPAEPTRP  180
QQDVGEVDGR LAESEQEVPP NAGKAKKKAS AQARKKPSAK QHAAAQEEED GDLMAEAEEE  240
VAPRQGDEED GKGPLPQRKS KRVAALSGSI CPPDPKRAKI VDAQKPGFGR KWNGNDEIMI  300
LEALVDQIRS GGNVPQEPGH PLFHELVQRL EGRTFNHSDV REKVRSLKRR YNDVVLSGLA  360
ITKDHDLQLH ELSCEIWGRS VAHAGDDKQR CLARDEQSSL ARDEQKSFAG DEEKSLARDE  420
QSSLARDEQK SFARDEKSLA RDEEKSLASD EQRSFDDMCK QFPLLAKEIK VLMEGQPAIM  480
ELFPRLDGDQ VVAIEKKLEN LRWIDMKRKK KMAVKMAKIR KGLIYKLEGA AILADGNMIH  540
Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157KKNRKKKKK
2203215KAKKKASAQARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029700.0AP002970.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504D03.
GenBankAP0032130.0AP003213.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644071.10.0basic salivary proline-rich protein 2
TrEMBLA0A0D3EPH30.0A0A0D3EPH3_9ORYZ; Uncharacterized protein
STRINGOBART01G17580.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17455910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-07DNA-binding storekeeper protein-related transcriptional regulator