PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G06590.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 366aa    MW: 38039.6 Da    PI: 8.0801
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G06590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82232.62.7e-109817671150
           DUF822  71 kgskpleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvlslvsssl 150
                      +g+kp+e++e++g+s s sp+ss+q        +sp++sy+asp+sssfps +s+ ++++ ++       + +lp+l++ls+++ss+
  OBART01G06590.1  98 RGYKPPERMEVIGCSVSPSPCSSYQ--------PSPRASYNASPTSSSFPSGASSPFLPHPNNmangvdgNPILPWLKTLSNSPSSK 176
                      799**********************........99*******************999999988999999999********9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.3E-1198170IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MHVVATGKGG VKMPPGLDPR TGVVGGWGAG GGISGGNFRA ESIAVRGFVE SFARAIVTTT  60
PPGDSRFAFV CISKSGGSWL LIGRWDLWWS GGCMNSGRGY KPPERMEVIG CSVSPSPCSS  120
YQPSPRASYN ASPTSSSFPS GASSPFLPHP NNMANGVDGN PILPWLKTLS NSPSSKKHPQ  180
LPPLLIHGGS ISAPVTPPLS SPTARTPRMK TDWDESNVQP TWTGSNSPCV VNSTPPSPGR  240
TMLPDPAWLA GIQISSTSPS SPTFSLVSSN PFSVFKDAIP VGNNSSRMCT PGQSGTCSPA  300
IPGMAPHPDI HMMDAVSDEF AFGSSTNGGH QAAGLVRAWE GERIHEDSGS DDLELTLGSS  360
RTRAAA
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622415.10.0protein BZR1 homolog 2
SwissprotQ0JPT40.0BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLA0A0D3EKU50.0A0A0D3EKU5_9ORYZ; Uncharacterized protein
STRINGOBART01G06590.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.13e-51BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]