 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
OB12G16200.1 |
Common Name | LOC102713973 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
Nin-like |
Protein Properties |
Length: 333aa MW: 36094.9 Da PI: 8.3609 |
Description |
Nin-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OB12G16200.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | RWP-RK | 72.8 | 4.4e-23 | 249 | 299 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
+k++ l d++ yF+ pi++AA++L+vc+T+LK iCR++G++RWP+Rk++s+
OB12G16200.1 249 TKKLCLGDVAPYFDQPIAKAARKLDVCATALKAICRKNGVQRWPYRKVRSI 299
7899999*****************************************996 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MLDNFHTDVV DDAPPPPPPP PTLVRSPDHC VASTSSAAPA PPEVTVDCRA CQVLREVVHS 60 NGLETTKLCI HGGDGAFYHA ILDVYRVKSR GLALAHHSII DFRGWGYDWV KQYLTDYAQR 120 RATGGFAVVQ DSLSAFHDAL CTPMPCSSHV SDAYKRAASS VAAARTNGDG DHRLVVQTDA 180 VVQPVASSSG CRVGAEAAAS SGDRQLVIDT AAIQQPASGP SQADHTVHQM QQCFHRADRT 240 ALAIQRERTK KLCLGDVAPY FDQPIAKAAR KLDVCATALK AICRKNGVQR WPYRKVRSID 300 RQIATLRRSG NGDTNEIEML IASRRRIVAG IIE
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AL831806 | 2e-47 | AL831806.5 Oryza sativa chromosome 12, . BAC OSJNBb0106P21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
GenBank | AL954160 | 2e-47 | AL954160.5 Oryza sativa chromosome 12, . BAC OSJNBb0078J08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
GenBank | AP014968 | 2e-47 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |