PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G10150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 378aa    MW: 41976.6 Da    PI: 7.9356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G10150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31247304260
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                    Dgy+WrKYGqK+vkgsefprsYY+Ct+++C+vk+kve +  d+++ ei+Y+geHnh+k
  OB12G10150.1 247 YDGYSWRKYGQKQVKGSEFPRSYYKCTHPTCSVKRKVEMTP-DGQIAEIVYNGEHNHPK 304
                   59***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS506008.7311121IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540013.92E-1742137No hitNo description
Gene3DG3DSA:3.30.310.1301.6E-443115No hitNo description
Gene3DG3DSA:2.20.25.802.9E-27240305IPR003657WRKY domain
SuperFamilySSF1182901.57E-24241305IPR003657WRKY domain
PROSITE profilePS5081122.573241305IPR003657WRKY domain
SMARTSM007749.6E-34246304IPR003657WRKY domain
PfamPF031062.5E-24248303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MCMTIVVCIA VPQRGNYSRI GHKMRPRRAG GEEERVLSHG DVGGSHWTLF VLDNTHPDSG  60
PRFVHHDSLP PTNLLPARRL AAVLRPLLPP SARIPLIEGP TPRQTNGYDC GVFVLAVARA  120
ICHWWATRRQ EGESDWFEAV KREVNADSVK AMSLQLHFLS CPSIASTSPC LQAVAAHETL  180
VGYAKSQEGH CCEACGIQAF FPIELEDSGS TYDQKKADTT QITCQDNLTV SHSVRQPVVT  240
VKNRLAYDGY SWRKYGQKQV KGSEFPRSYY KCTHPTCSVK RKVEMTPDGQ IAEIVYNGEH  300
NHPKPYPLKK PSLSSVETVV ATNDAGLENQ LEGCDQAIGS DVVIEAFSGR KKRLSRCNTC  360
EYVDDKREGI ISRSILEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-142483051977Probable WRKY transcription factor 4
2ayd_A2e-142483051674WRKY transcription factor 1
2lex_A2e-142483051977Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G10150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2428551e-128AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence.
GenBankAP0149681e-128AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAY3418601e-128AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds.
GenBankBX0004961e-128BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005031e-128BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126201e-128CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698188.10.0PREDICTED: uncharacterized protein LOC102718700
TrEMBLJ3NAK70.0J3NAK7_ORYBR; Uncharacterized protein
STRINGOB12G10150.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.12e-26WRKY DNA-binding protein 4