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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
OB11G13310.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 466aa MW: 51339.9 Da PI: 4.2962 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB11G13310.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 211 | 6.5e-65 | 103 | 463 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
+lLl+ Aeav++gd la+ + rl + +++++++ Rla +f ++L++r+++ ++++y +p++ + s ++ ++++ +e+sP++kf
OB11G13310.1 103 SDLLLAGAEAVEAGDSILASIAFLRLDDFlsgvpENSAASSFDRLAYHFDQGLRSRMSSACNGCY---QPQPLP----SGNMLVHQIIQELSPFVKF 192
679**********************999866555566778*******************999999...455555....455778899********** PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger.LakfAeelgvpfefnvlvakrledl 189
+++t+NqaIl+a+ g+ vH++D++i++G+QW +L+ La g s+R+T+v + +++++ t+ r L++fAe+l++pf++n + +++ e+l
OB11G13310.1 193 ANFTTNQAILDATVGDMDVHVVDLNIGEGIQWSSLMSDLAR--CGGKSFRLTTVTG---DCNDSTHDTAVRlLSEFAESLELPFQYNSIFMHNEEEL 284
****************************************7..4668*******99...5777777777662689*************977766666 PP
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse......sFlerflealeyysalfdsleaklpres 279
++++ + + +++V++ l+ +++s+ + + +L +vk+l+Pk+vv ve+++ + +++ F+e f+eal++++++f+sl++ ++ +
OB11G13310.1 285 --HAFSEDCKGSVIVSCDTTS--LYYKPLSTLQ--NVLLVFVKKLQPKLVVTVEEDLVRiGRGaspfstCFVEFFFEALHHFTTVFESLASCFSGSN 375
..788888899******9955..5545666666..89*******************55434434455557889999*************99998888 PP
GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+ vE el+g++i++ v + g+ r+e + +e l GF++ +ls + +qa++l+ ++ + + v +e+g l l+Wk+rpL+svS+W
OB11G13310.1 376 yeTCLRLVEMELMGPRIQDFVGNYGSVRVEANA-----SEVL--EGFRACELSACNIAQARMLVGLFN-RVFGVVCEKGRLALCWKSRPLISVSVW 463
6677789********************999888.....5555..5***********************.77************************* PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 466 aa
Download sequence Send
to blast |
METISYPCSP LLSFPTHEES IYSIWPSQAS LHENANLHAD PCSDQQKDLD SLDTMAIDSN 60
ELHHQHDAPD VDVPVSCGDR VLGQENGNLA AIQEELLEED SLSDLLLAGA EAVEAGDSIL 120
ASIAFLRLDD FLSGVPENSA ASSFDRLAYH FDQGLRSRMS SACNGCYQPQ PLPSGNMLVH 180
QIIQELSPFV KFANFTTNQA ILDATVGDMD VHVVDLNIGE GIQWSSLMSD LARCGGKSFR 240
LTTVTGDCND STHDTAVRLL SEFAESLELP FQYNSIFMHN EEELHAFSED CKGSVIVSCD 300
TTSLYYKPLS TLQNVLLVFV KKLQPKLVVT VEEDLVRIGR GASPFSTCFV EFFFEALHHF 360
TTVFESLASC FSGSNYETCL RLVEMELMGP RIQDFVGNYG SVRVEANASE VLEGFRACEL 420
SACNIAQARM LVGLFNRVFG VVCEKGRLAL CWKSRPLISV SVWIPV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC120534 | 0.0 | AC120534.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0084A20, complete sequence. |
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
