PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G19830.1
Common NameLOC102718767
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 285aa    MW: 30011.7 Da    PI: 7.5007
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G19830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.26.2e-3157110458
   ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                    +Y+eClkNhA+ +GghavDGCgEfm++ geegt++al+CaAC+CHRnFHR+e+e
  OB09G19830.1  57 GKYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTIDALRCAACNCHRNFHRKESE 110
                   58*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-3537111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-3058108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.8E-2958109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.64759108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.23E-20212282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-33214282IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-26221277IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDFDDHDDGD EEMPPMPVSS SYETPPQHGL GVGGGMAPKP PGELGSRVKG PSSCGGGKYR  60
ECLKNHAVGI GGHAVDGCGE FMAAGEEGTI DALRCAACNC HRNFHRKESE SLAGDGSPFS  120
PAAVVPYGAT PHHQFSPYYR TPAGYLHHHQ HHMAAAAAAA AAAAAAAPAG HPQRPLALPS  180
TSHSGRDDVD DLSGMVGPMS AVGPLSGMSL GAGPSGSGSG KKRFRTKFTQ EQKDKMLAFA  240
ERVGWRIQKH DEAAVQQFCD EVGVKRHVLK VWMHNNKHTL GKKLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-292222791875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G19830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660717.10.0PREDICTED: zinc-finger homeodomain protein 1
SwissprotQ6YXH51e-172ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLJ3MYA40.0J3MYA4_ORYBR; Uncharacterized protein
STRINGOB09G19830.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.18e-58homeobox protein 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]