PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB09G16590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 25000.7 Da PI: 5.2385 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 2.9e-12 | 11 | 57 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+ iN ++Lr+llP+ +K +Ka+ L +++ ++k+L OB09G16590.1 11 RSHSEAERRRRQSINGHPARLRSLLPNT-----TKTDKASLLAEVIAHVKEL 57 78*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.555 | 8 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-13 | 11 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-10 | 11 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.29E-9 | 11 | 60 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.7E-13 | 12 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-11 | 14 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 8.7E-5 | 110 | 157 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 4.2E-5 | 110 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MMDAKALAAS RSHSEAERRR RQSINGHPAR LRSLLPNTTK TDKASLLAEV IAHVKELKRQ 60 TSAIAAAGEA EDGDEDGVGR PAGQLLPTEA DELAVDAAVD VEGRLVVRAS LCCEDRPDLI 120 PDIGRALAAL RLRARRAEIT TIGGRVRSVL LITADDQLGD DGDDVDEDGR RRHGMGNDED 180 DDDECAASHR RHECIATVQE ALRGVMDRRS ASSDTSSSGG SSIKRQRMNY AA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB09G16590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001347905.1 | 2e-87 | uncharacterized protein LOC100279487 | ||||
Swissprot | Q9LS08 | 2e-55 | BH032_ARATH; Transcription factor AIG1 | ||||
TrEMBL | J3MXD0 | 1e-161 | J3MXD0_ORYBR; Uncharacterized protein | ||||
STRING | OB09G16590.1 | 1e-161 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68810.1 | 5e-34 | bHLH family protein |