PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G21050.1 | ||||||||
Common Name | LOC102702875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 246aa MW: 27136.4 Da PI: 9.7846 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53 | 6.2e-17 | 29 | 116 | 1 | 84 |
EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k l+psd+ s +l +p ++a + +++ + +t+ +ed g++W +++ +++++ + ltkGW+ Fv+++gLk+gD+v F + OB08G21050.1 29 FEKLLMPSDMCGStEWLGIPEEHAWKLgrmVQDQDGYFTVFVEDgvVPGKQWHFRY--WGNKKIHGLTKGWRCFVSEKGLKAGDTVSFFR 116 89******9966659************9884444578899999966678*******..*****************************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.9E-18 | 25 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-16 | 27 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.16E-17 | 28 | 129 | No hit | No description |
SMART | SM01019 | 1.2E-5 | 29 | 129 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-13 | 29 | 124 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.207 | 30 | 131 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAASAPLSAT TVGVEDVADI EVLEMEYLFE KLLMPSDMCG STEWLGIPEE HAWKLGRMVQ 60 DQDGYFTVFV EDGVVPGKQW HFRYWGNKKI HGLTKGWRCF VSEKGLKAGD TVSFFRGAVC 120 SRLFICYRSG ARANLCSFAT SPHGLSAPLG QARPRAVNEV GGRGQRRQTS SGRSGALPLP 180 LPVSSRRRHR TSVVRPIPEP MTEMPPILES MFLVATPPAV KTIRLFGVDI KVPLPSIVQP 240 KRESNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-12 | 26 | 135 | 11 | 122 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G21050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660090.1 | 0.0 | PREDICTED: B3 domain-containing protein Os02g0455800-like | ||||
Swissprot | Q6K3B2 | 2e-92 | Y2558_ORYSJ; B3 domain-containing protein Os02g0455800 | ||||
TrEMBL | J3MSM5 | 0.0 | J3MSM5_ORYBR; Uncharacterized protein | ||||
STRING | OB08G21050.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15159 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 5e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102702875 |