PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G15650.1

Common Name

LOC102715224

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YA

Protein Properties

Length: 176aa MW: 19135.4 Da PI: 9.9926

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G15650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.3	1.9e-31	82	137	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ep+YVNa+Qy++Il+RRq+Rak+e+e+k +ksrkpylheSRh hAl+R+Rgs+GrF OB08G15650.1 82 EPIYVNARQYHGILRRRQSRAKAESENKA-NKSRKPYLHESRHLHALKRARGSSGRF 137 8**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.7E-32	79	140	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.553	80	140	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.5E-27	82	137	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.0E-23	83	105	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.0E-23	114	137	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MKPDGETQLR PTAAGHPDPG LSTSSAEYVA PVGPATTQVA YPYIGTYYGG IYGAYSGQPL 60 VNAALMAMPP HSVPLATDVV LEPIYVNARQ YHGILRRRQS RAKAESENKA NKSRKPYLHE 120 SRHLHALKRA RGSSGRFLNS KAMEGKQDSK SVDKNDGALP AEENRDNKDT NSNTKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	8e-20	82	141	3	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G15650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288027	0.0	AB288027.1 Oryza sativa Japonica Group OsHAP2A mRNA for HAP2 subunit of HAP complex, complete cds.
GenBank	AK059903	0.0	AK059903.1 Oryza sativa Japonica Group cDNA clone:006-208-G09, full insert sequence.
GenBank	HQ731479	0.0	HQ731479.1 Oryza sativa Japonica Group NF-Y transcription factor 21 (NF-Y18) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695809.1	1e-127	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	1e-35	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	J3MR36	1e-126	J3MR36_ORYBR; Uncharacterized protein
STRING	OB08G15650.1	1e-127	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16558	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-35	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Entrez Gene	102715224

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]