PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G26210.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 287aa    MW: 31513.3 Da    PI: 5.3628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G26210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-102112511055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  OB07G26210.1 211 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 251
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14202267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12206263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-12210255No hitNo description
PfamPF000108.1E-8211251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEADVMMAQL LGAHGDRLFA YESVAESMEA MAAMFLPSLD TDSNSSSSCL NYDVPPQCWP  60
QHGHSNSVTS FPDDPVHGYE SFEFPVMDPL PPAHFHAHCG IPYLGEDLSP PQCNHPSARV  120
EEAANVTTPM ANKRKSNIAE FIQASKKSKK GGKRDPIGSD EGDNAYIDTQ SSSSCTPEEG  180
NLEGNAKSSS KKTGARANRG AATDPQSLYA RKRRERINER LRILQNLVPN GTKVDISTML  240
EEAVQYVKFL QLQIKLLSSD DMWMYAPIAY NGVNISNIDL NISSLQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G26210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039852e-38AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0051492e-38AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149632e-38AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-38CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657901.20.0PREDICTED: transcription factor bHLH84-like
TrEMBLJ3MMI90.0J3MMI9_ORYBR; Uncharacterized protein
STRINGOB07G26210.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.14e-39root hair defective 6-like 4